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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155075 (87 seq.)
>W1710994940
LPZN01000013
Actinomycetota
Rhodococcus gordoniae [LPZN]
19293
19217
-
Arg
TCT
[ENA]
¡û
>W1711050106
LRRH01000011
Actinomycetota
Rhodococcus phenolicus [LRRH]
72295
72219
-
Arg
TCT
[ENA]
¡û
>W1711050165
LRRI01000026
Actinomycetota
Rhodococcus pyridinivorans [LRRI]
96140
96064
-
Arg
TCT
[ENA]
¡û
>W1711050285
LRRK01000019
Actinomycetota
Rhodococcus rhodochrous [LRRK]
87810
87734
-
Arg
TCT
[ENA]
¡û
>W1711050358
LRRL01000078
Actinomycetota
Rhodococcus ruber [LRRL]
82775
82699
-
Arg
TCT
[ENA]
¡û
>W1711129387
LUTX01000012
Actinomycetota
Rhodococcus sp. HS-D2 [LUTX]
159786
159862
+
Arg
TCT
[ENA]
¡û
>W1711281688
LZMJ01000081
Actinomycetota
Rhodococcus sp. 852002-51564_SCH6189132-a [LZMJ]
37929
38005
+
Arg
TCT
[ENA]
¡û
>W1711539260
MLYX02000003
Actinomycetota
Rhodococcus sp. M8 [MLYX]
84956
84882
-
Arg
TCT
[ENA]
¡û
>W1711790880
MWIH01000009
Actinomycetota
Saccharomonospora piscinae LRS4.154 [MWIH]
225430
225354
-
Arg
TCT
[ENA]
¡û
>C171039211
CP015529
Actinomycetota
Rhodococcus sp. WB1 [CP015529]
3164359
3164433
+
Arg
TCT
-
¡û
>C171051575
CP016819
Actinomycetota
Rhodococcus sp. p52 [CP016819]
3110889
3110813
-
Arg
TCT
-
¡û
>C171072260
CP018063
Actinomycetota
Rhodococcus sp. 2G [CP018063]
1080880
1080804
-
Arg
TCT
-
¡û
>W131059076
ANGC01000020
Actinomycetota
Rhodococcus ruber Chol-4 [ANGC]
75614
75538
-
Arg
TCT
[ENA]
¡û
>W131089882
AOEX01000042
Actinomycetota
Rhodococcus ruber BKS 20-38 [AOEX]
28429
28353
-
Arg
TCT
[ENA]
¡û
>W131219885
ATYX01000007
Actinomycetota
Thermocrispum agreste DSM 44070 [ATYX]
312
238
-
Arg
TCT
[ENA]
¡û
>W131251277
CAVJ010000252
Actinomycetota
Rhodococcus aetherivorans EsD8 [CAVJ]
6664
6738
+
Arg
TCT
[ENA]
¡û
>WENV180691289
OCZS010093637
[OCZS] soil metagenome; soil
574
650
+
Arg
TCT
[ENA]
¢þ
>WENV180757758
ODHW01001754
[ODHW] human metagenome; G_DNA_Tongue dorsum
10548
10472
-
Arg
TCT
[ENA]
¢þ
>WENV180816432
ODJP01013610
[ODJP] human metagenome; G_DNA_Tongue dorsum
581
505
-
Arg
TCT
[ENA]
¢þ
>WENV180820363
ODJR01005232
[ODJR] human metagenome; G_DNA_Tongue dorsum
802
878
+
Arg
TCT
[ENA]
¢þ
>WENV180854957
ODKX01019154
[ODKX] human metagenome; G_DNA_Tongue dorsum
1553
1477
-
Arg
TCT
[ENA]
¢þ
>WENV180897453
ODNI01025443
[ODNI] human metagenome; G_DNA_Tongue dorsum
430
505
+
Arg
TCT
[ENA]
¢þ
>W141092533
AVAE01000005
Actinomycetota
Rhodococcus aetherivorans BCP1 [AVAE]
86579
86505
-
Arg
TCT
[ENA]
¡û
>WENV181096249
OEBY01074967
[OEBY] human metagenome; G_DNA_Tongue dorsum
305
381
+
Arg
TCT
[ENA]
¢þ
>WENV181167756
OEIU01069472
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
709
635
-
Arg
TCT
[ENA]
¢þ
>W141200903
AZAK01000005
Actinomycetota
Haloechinothrix halophila YIM 93223 [AZAK]
895301
895227
-
Arg
TCT
[ENA]
¡û
>W141202637
AZHI01000089
Actinomycetota
Rhodococcus rhodochrous ATCC 21198 [AZHI]
26998
27072
+
Arg
TCT
[ENA]
¡û
>W141215928
AZUM01000003
Actinomycetota
Saccharomonospora piscinae CNQ490 [AZUM]
281859
281933
+
Arg
TCT
[ENA]
¡û
>WENV170011620
APMI01077142
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
937
861
-
Arg
TCT
[ENA]
¢þ
>C181060880
CP022208
Actinomycetota
Rhodococcus pyridinivorans TG9 [CP022208]
2342286
2342211
-
Arg
TCT
-
¡û
>C181074103
CP022915
Actinomycetota
Rhodococcus pyridinivorans GF3 [CP022915]
4336545
4336620
+
Arg
TCT
-
¡û
>C181099328
CP024315
Actinomycetota
Rhodococcus ruber P14 [CP024315]
106513
106437
-
Arg
TCT
-
¡û
>C181107719
CP024890
Actinomycetota
Rhodococcus ruber YYL [CP024890]
777695
777770
+
Arg
TCT
-
¡û
>C181175160
CP029146
Actinomycetota
Rhodococcus ruber SD3 [CP029146]
1970283
1970207
-
Arg
TCT
-
¡û
>C181225029
LT906450
Actinomycetota
Rhodococcus rhodochrous NCTC10210 [LT906450]
1925506
1925431
-
Arg
TCT
-
¡û
>C191025716
CP023714
Actinomycetota
Rhodococcus ruber YC-YT1 [CP023714]
2286220
2286144
-
Arg
TCT
-
¡û
>C191124714
CP034412
Actinomycetota
Glutamicibacter creatinolyticus LGCM 259 [CP034412]
1865714
1865788
+
Arg
TCT
-
¡û
>C191157606
CP038030
Actinomycetota
Rhodococcus ruber R1 [CP038030]
1966670
1966595
-
Arg
TCT
-
¡û
>C191182163
CP040719
Actinomycetota
Rhodococcus pyridinivorans YF3 [CP040719]
1651992
1651917
-
Arg
TCT
-
¡û
>W141773331
JOIJ01000012
Actinomycetota
Prauserella rugosa [JOIJ]
819
743
-
Arg
TCT
[ENA]
¡û
>C141011393
CP006996
Actinomycetota
Rhodococcus pyridinivorans SB3094 [CP006996]
87901
87825
-
Arg
TCT
[Ensembl]
¡û
>W1910584596
JXXO01000062
Actinomycetota
Rhodococcus ruber OA1 [JXXO]
5821
5896
+
Arg
TCT
[ENA]
¡û
>W1910888384
NERM01000005
Actinomycetota
Rhodococcus sp. BUPNP1 [NERM]
188562
188637
+
Arg
TCT
[ENA]
¡û
>W1810050256
PCZU01000215
Actinomycetota
Rhodococcus sp. ENV425 [PCZU]
6682
6758
+
Arg
TCT
[ENA]
¡û
>W1810052670
PDCO01000031
Actinomycetota
Mycolicibacterium boenickei CCUG47580 [PDCO]
20256
20330
+
Arg
TCT
[ENA]
¡û
>W1810367226
PVXK01000001
Actinomycetota
Rhodococcus rhodochrous EP4 [PVXK]
1910060
1910135
+
Arg
TCT
[ENA]
¡û
>C151080832
CP011341
Actinomycetota
Rhodococcus aetherivorans IcdP1 [CP011341]
2327103
2327027
-
Arg
TCT
[Ensembl]
¡û
>W1510001816
AZYO01000099
Actinomycetota
Rhodococcus rhodochrous KG-21 [AZYO]
8635
8559
-
Arg
TCT
[ENA]
¡û
>W1510020127
BBXP01000027
Actinomycetota
Rhodococcus rhodochrous NBRC 16069 [BBXP]
77340
77416
+
Arg
TCT
[ENA]
¡û
>W1510053298
CCSD01000053
Actinomycetota
Rhodococcus ruber [CCSD]
82543
82467
-
Arg
TCT
[ENA]
¡û
>C10112969
CP001683
Actinomycetota
Saccharomonospora viridis DSM 43017 [CP001683]
1209539
1209463
-
Arg
TCT
[Ensembl]
¡û
>W1511303371
JPJJ01000002
Actinomycetota
Rhodococcus sp. p52 [JPJJ]
82120
82044
-
Arg
TCT
[ENA]
¡û
>W1511360277
JRZE01000006
Actinomycetota
Saccharomonospora viridis JCM 3315 [JRZE]
1351
1275
-
Arg
TCT
[ENA]
¡û
>W1511401666
JTIZ01000122
Actinomycetota
Rhodococcus sp. Chr-9 [JTIZ]
81703
81627
-
Arg
TCT
[ENA]
¡û
>W1511402121
JTJI01000008
Actinomycetota
Prauserella sp. Am3 [JTJI]
79155
79231
+
Arg
TCT
[ENA]
¡û
>W1511640461
LDUF01000016
Actinomycetota
Rhodococcus ruber P25 [LDUF]
38102
38178
+
Arg
TCT
[ENA]
¡û
>W11155974
AFAQ01001954
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
83679
83603
-
Arg
TCT
[ENA]
¡û
>W1511687672
LFVR01000414
Actinomycetota
Streptomyces regensis NRRL B-11479 [LFVR]
799
723
-
Arg
TCT
[ENA]
¡û
>W1610040485
AZXY01000002
Actinomycetota
Rhodococcus pyridinivorans KG-16 [AZXY]
397422
397498
+
Arg
TCT
[ENA]
¡û
>W1610050422
BBFV01001329
Actinomycetota
Rhodococcus phenolicus JCM 14914 [BBFV]
645
721
+
Arg
TCT
[ENA]
¡û
>W1610050852
BBGG01000612
Actinomycetota
Rhodococcus pyridinivorans JCM 10940 = NBRC 100608 [BBGG]
316
392
+
Arg
TCT
[ENA]
¡û
>W1610050981
BBGJ01000397
Actinomycetota
Rhodococcus zopfii NBRC 100606 = JCM 9919 [BBGJ]
573
649
+
Arg
TCT
[ENA]
¡û
>W121021560
AGVW02000037
Actinomycetota
Rhodococcus rhodochrous BKS6-46 [AGVW]
1850
1774
-
Arg
TCT
[ENA]
¡û
>W121060069
AJFC01000342
Actinomycetota
Rhodococcus sp. P14 [AJFC]
24969
24893
-
Arg
TCT
[ENA]
¡û
>W121068663
AJVB01000414
Actinomycetota
Rhodococcus sp. R1101 [AJVB]
371
447
+
Arg
TCT
[ENA]
¡û
>W121123643
BAED01000024
Actinomycetota
Gordonia amarae NBRC 15530 [BAED]
81482
81408
-
Arg
TCT
[ENA]
¡û
>W121024637
AHBW01000033
Actinomycetota
Rhodococcus pyridinivorans AK37 [AHBW]
9162
9088
-
Arg
TCT
[ENA]
¡û
>W1610187928
FBUK01000075
Actinomycetota
Rhodococcus rhodochrous [FBUK]
38174
38250
+
Arg
TCT
[ENA]
¡û
>W1610849597
LPZN01000013
Actinomycetota
Rhodococcus gordoniae [LPZN]
19293
19217
-
Arg
TCT
[ENA]
¡û
>W1610891235
LRRH01000011
Actinomycetota
Rhodococcus phenolicus [LRRH]
72295
72219
-
Arg
TCT
[ENA]
¡û
>W1610891294
LRRI01000026
Actinomycetota
Rhodococcus pyridinivorans [LRRI]
96140
96064
-
Arg
TCT
[ENA]
¡û
>W1610891414
LRRK01000019
Actinomycetota
Rhodococcus rhodochrous [LRRK]
87810
87734
-
Arg
TCT
[ENA]
¡û
>W1610891487
LRRL01000078
Actinomycetota
Rhodococcus ruber [LRRL]
82775
82699
-
Arg
TCT
[ENA]
¡û
>W1610940460
LUTX01000012
Actinomycetota
Rhodococcus sp. HS-D2 [LUTX]
159786
159862
+
Arg
TCT
[ENA]
¡û
>W1611040973
LZMJ01000081
Actinomycetota
Rhodococcus sp. 852002-51564_SCH6189132-a [LZMJ]
37929
38005
+
Arg
TCT
[ENA]
¡û
>W1710037599
AZXY01000002
Actinomycetota
Rhodococcus pyridinivorans KG-16 [AZXY]
397422
397498
+
Arg
TCT
[ENA]
¡û
>W1710046821
BBFV01001329
Actinomycetota
Rhodococcus phenolicus JCM 14914 [BBFV]
645
721
+
Arg
TCT
[ENA]
¡û
>W1710047251
BBGG01000612
Actinomycetota
Rhodococcus pyridinivorans JCM 10940 = NBRC 100608 [BBGG]
316
392
+
Arg
TCT
[ENA]
¡û
>W1710047380
BBGJ01000397
Actinomycetota
Rhodococcus zopfii NBRC 100606 = JCM 9919 [BBGJ]
573
649
+
Arg
TCT
[ENA]
¡û
>W1710072090
BCXC01000004
Actinomycetota
Rhodococcus pyridinivorans JCM 10940 = NBRC 100608 [BCXC]
392961
393037
+
Arg
TCT
[ENA]
¡û
>W1710072210
BCXE01000041
Actinomycetota
Rhodococcus ruber NBRC 15591 [BCXE]
38558
38634
+
Arg
TCT
[ENA]
¡û
>W1710072393
BCXI01000023
Actinomycetota
Rhodococcus zopfii NBRC 100606 = JCM 9919 [BCXI]
45158
45082
-
Arg
TCT
[ENA]
¡û
>W1710189544
FBUK01000075
Actinomycetota
Rhodococcus rhodochrous [FBUK]
38174
38250
+
Arg
TCT
[ENA]
¡û
>W1710534515
FNRX01000002
Actinomycetota
Rhodococcus pyridinivorans [FNRX]
3615281
3615357
+
Arg
TCT
[ENA]
¡û
>W1710572473
FOWS01000001
Actinomycetota
Saccharomonospora viridis [FOWS]
1338392
1338468
+
Arg
TCT
[ENA]
¡û
>W1710608384
FXAV01000001
Actinomycetota
Rhodococcus rhodochrous J3 [FXAV]
69625
69549
-
Arg
TCT
[ENA]
¡û
>W1710622275
JNVR01000143
Actinomycetota
Rhodococcus rhodochrous [JNVR]
8263
8189
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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