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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155102 (55 seq.)
>W131158423
AQUB01000001
Actinomycetota
actinobacterium SCGC AAA023-J06 [AQUB]
98672
98757
+
Ser
TGA
[ENA]
¡û
>W131162566
AQYZ01000003
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
36256
36341
+
Ser
TGA
[ENA]
¡û
>W131162943
AQZI01000002
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
50755
50670
-
Ser
TGA
[ENA]
¡û
>W131237910
AUSE01000057
Actinomycetota
actinobacterium SCGC AAA028-I14 [AUSE]
36571
36486
-
Ser
TGA
[ENA]
¡û
>WENV016747
AACY020469171
Marine microbial communities from Global Ocean Sampling (GOS)
1603
1690
+
Ser
TGA
[ENA]
>WENV180111374
OAPN01070151
[OAPN] marine metagenome; 2011
21
106
+
Ser
TGA
[ENA]
¢þ
>WENV180357375
OBNN01005717
[OBNN] marine metagenome; Coastal water
939
854
-
Ser
TGA
[ENA]
¢þ
>WENV180377131
OBON01000995
[OBON] marine metagenome; sea water
2632
2717
+
Ser
TGA
[ENA]
¢þ
>WENV181367159
OFPW01000051
[OFPW] freshwater metagenome; Freshwater Lake
109
194
+
Ser
TGA
[ENA]
¢þ
>WENV181367579
OFQB01015460
[OFQB] freshwater metagenome; Freshwater Lake
159
74
-
Ser
TGA
[ENA]
¢þ
>WENV181368312
OFQL01000495
[OFQL] freshwater metagenome; Freshwater Lake
1007
922
-
Ser
TGA
[ENA]
¢þ
>WENV181368790
OFQN01000550
[OFQN] freshwater metagenome; Freshwater Lake
1445
1360
-
Ser
TGA
[ENA]
¢þ
>WENV181369733
OFQP01030989
[OFQP] freshwater metagenome; Freshwater Lake
501
416
-
Ser
TGA
[ENA]
¢þ
>WENV181369928
OFQR01002548
[OFQR] freshwater metagenome; Freshwater Lake
1036
951
-
Ser
TGA
[ENA]
¢þ
>WENV181370251
OFQS01001196
[OFQS] freshwater metagenome; Freshwater Lake
91
6
-
Ser
TGA
[ENA]
¢þ
>WENV181370676
OFQT01002733
[OFQT] freshwater metagenome; Freshwater Lake
836
751
-
Ser
TGA
[ENA]
¢þ
>WENV181377027
OFRA01001370
[OFRA] wastewater metagenome; Lake Maggiore Verbania
3057
2972
-
Ser
TGA
[ENA]
¢þ
>WENV181379566
OFRD01003245
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1137
1052
-
Ser
TGA
[ENA]
¢þ
>WENV181384590
OFRI01003271
[OFRI] wastewater metagenome; Exp Tend VB 90WW
2481
2566
+
Ser
TGA
[ENA]
¢þ
>WENV181386132
OFRL01000803
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
3761
3676
-
Ser
TGA
[ENA]
¢þ
>WENV181386135
OFRL01000822
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
10529
10614
+
Ser
TGA
[ENA]
¢þ
>WENV181386515
OFRL01005644
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
981
1066
+
Ser
TGA
[ENA]
¢þ
>WENV181395734
OFSB01001160
[OFSB] freshwater metagenome; Freshwater Lake
1273
1358
+
Ser
TGA
[ENA]
¢þ
>WENV181399722
OFSE01061459
[OFSE] wastewater metagenome; Exp Tend VB 50WW
146
61
-
Ser
TGA
[ENA]
¢þ
>WENV181400066
OFSF01001173
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1590
1505
-
Ser
TGA
[ENA]
¢þ
>WENV181400431
OFSF01006485
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1521
1606
+
Ser
TGA
[ENA]
¢þ
>WENV181836716
OGVJ01022025
[OGVJ] freshwater metagenome; freshwater
469
384
-
Ser
TGA
[ENA]
¢þ
>WENV181853434
OGWI01005325
[OGWI] freshwater metagenome; freshwater
119
204
+
Ser
TGA
[ENA]
¢þ
>W141202942
AZHS01000023
Actinomycetota
actinobacterium SCGC AAA041-L13 [AZHS]
5062
4977
-
Ser
TGA
[ENA]
¡û
>WENV001980
AACY020055745
Marine microbial communities from Global Ocean Sampling (GOS)
1702
1615
-
Ser
TGA
[ENA]
>WENV170570425
FLOH01000004
[FLOH] marine metagenome; water
828439
828524
+
Ser
TGA
[ENA]
¢þ
>WENV170572725
FLOH01001229
[FLOH] marine metagenome; water
2084
2169
+
Ser
TGA
[ENA]
¢þ
>WENV170600512
FUWD010130424
[FUWD] metagenome; unknown
23
108
+
Ser
TGA
[ENA]
¢þ
>WENV170609669
FUWD011465924
[FUWD] metagenome; unknown
231
146
-
Ser
TGA
[ENA]
¢þ
>WENV170620508
FUWD013032909
[FUWD] metagenome; unknown
318
403
+
Ser
TGA
[ENA]
¢þ
>WENV170625263
FUWD013194496
[FUWD] metagenome; unknown
2319
2404
+
Ser
TGA
[ENA]
¢þ
>WENV170628651
FUWD013250359
[FUWD] metagenome; unknown
318
403
+
Ser
TGA
[ENA]
¢þ
>WENV170633505
FUWD013397385
[FUWD] metagenome; unknown
2319
2404
+
Ser
TGA
[ENA]
¢þ
>WENV170645620
JNSL01000067
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
17864
17949
+
Ser
TGA
[ENA]
¢þ
>C181018683
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
291897
291982
+
Ser
TGA
-
¡û
>C181018748
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
283646
283561
-
Ser
TGA
-
¡û
>C181020857
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
1423770
1423685
-
Ser
TGA
-
¡û
>C181021092
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
17417
17502
+
Ser
TGA
-
¡û
>C181021266
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
1347558
1347473
-
Ser
TGA
-
¡û
>C181021379
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
1372947
1372862
-
Ser
TGA
-
¡û
>WENV057916
AACY023311036
Marine microbial communities from Global Ocean Sampling (GOS)
493
406
-
Ser
TGA
[ENA]
>WENV058375
AACY023326932
Marine microbial communities from Global Ocean Sampling (GOS)
273
186
-
Ser
TGA
[ENA]
>WENV058603
AACY023335185
Marine microbial communities from Global Ocean Sampling (GOS)
1292
1379
+
Ser
TGA
[ENA]
>WENV058831
AACY023343688
Marine microbial communities from Global Ocean Sampling (GOS)
1125
1212
+
Ser
TGA
[ENA]
>W1610597591
LFFA01000054
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
94
9
-
Ser
TGA
[ENA]
¡û
>W1610625351
LIAM01000026
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
1863
1778
-
Ser
TGA
[ENA]
¡û
>W1610625375
LIAN01000113
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
1451
1366
-
Ser
TGA
[ENA]
¡û
>W1710718838
LFFA01000054
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
94
9
-
Ser
TGA
[ENA]
¡û
>W1710756478
LIAM01000026
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
1863
1778
-
Ser
TGA
[ENA]
¡û
>W1710756502
LIAN01000113
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
1451
1366
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK