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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155156 (111 seq.)
>W1711082114
LSTQ01000001
Actinomycetota
Corynebacterium stationis [LSTQ]
275249
275325
+
Arg
CCG
[ENA]
¡û
>W1711187705
LWPR01000061
Actinomycetota
Corynebacterium sp. HMSC04H06 [LWPR]
10030
10106
+
Arg
CCG
[ENA]
¡û
>W1711507540
MKXT01000020
Actinomycetota
Corynebacterium sp. S5S1 [MKXT]
75534
75608
+
Arg
CCG
[ENA]
¡û
>W1711511697
MLCQ01000018
Actinomycetota
Corynebacterium sp. NML140438 [MLCQ]
327
251
-
Arg
CCG
[ENA]
¡û
>W1712077682
NGUZ01000003
Actinomycetota
Corynebacterium kefirresidentii OG2 [NGUZ]
19798
19872
+
Arg
CCG
[ENA]
¡û
>C171001828
CP009244
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 DSM 20306 [CP009244]
1809990
1810066
+
Arg
CCG
-
¡û
>C171001953
CP009246
Actinomycetota
Corynebacterium flavescens OJ8 [CP009246]
1074514
1074440
-
Arg
CCG
-
¡û
>C171002134
CP009251
Actinomycetota
Corynebacterium stationis 622 [CP009251]
1738638
1738714
+
Arg
CCG
-
¡û
>C171064721
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
1376217
1376291
+
Arg
CCG
-
¡û
>C171098511
CP019705
Actinomycetota
Corynebacterium ammoniagenes KCCM 40472 [CP019705]
1896581
1896657
+
Arg
CCG
-
¡û
>C171101840
CP019963
Actinomycetota
Corynebacterium stationis LMG 21670 [CP019963]
1607169
1607245
+
Arg
CCG
-
¡û
>W131164494
ARAV01000002
Actinomycetota
Corynebacterium lubricantis DSM 45231 [ARAV]
127469
127545
+
Arg
CCG
[ENA]
¡û
>WENV180228505
OBCD01000037
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
75559
75633
+
Arg
CCG
[ENA]
¢þ
>WENV180554297
OCJN01000063
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
29836
29910
+
Arg
CCG
[ENA]
¢þ
>WENV180711393
ODFN01000700
[ODFN] human metagenome; G_DNA_Anterior nares
990
916
-
Arg
CCG
[ENA]
¢þ
>WENV180711599
ODFP01010044
[ODFP] human metagenome; G_DNA_Anterior nares
159
85
-
Arg
CCG
[ENA]
¢þ
>WENV180749730
ODHR01003541
[ODHR] human metagenome; G_DNA_Anterior nares
73
-1
-
Arg
CCG
[ENA]
¢þ
>WENV180766251
ODIE01000386
[ODIE] human metagenome; G_DNA_Anterior nares
1534
1608
+
Arg
CCG
[ENA]
¢þ
>WENV180836590
ODKF01002489
[ODKF] human metagenome; G_DNA_Anterior nares
576
650
+
Arg
CCG
[ENA]
¢þ
>WENV180838996
ODKH01013582
[ODKH] human metagenome; G_DNA_Anterior nares
140
214
+
Arg
CCG
[ENA]
¢þ
>WENV180844715
ODKO01000118
[ODKO] human metagenome; G_DNA_Anterior nares
1858
1932
+
Arg
CCG
[ENA]
¢þ
>WENV180878912
ODLY01001600
[ODLY] human metagenome; G_DNA_Anterior nares
308
382
+
Arg
CCG
[ENA]
¢þ
>WENV180913429
ODSU01000439
[ODSU] human metagenome; G_DNA_Anterior nares
204
278
+
Arg
CCG
[ENA]
¢þ
>WENV180916219
ODTC01000218
[ODTC] human metagenome; G_DNA_Anterior nares
4787
4713
-
Arg
CCG
[ENA]
¢þ
>WENV180917938
ODTE01011970
[ODTE] human metagenome; G_DNA_Anterior nares
165
91
-
Arg
CCG
[ENA]
¢þ
>WENV180937565
ODTW01012292
[ODTW] human metagenome; G_DNA_Anterior nares
95
21
-
Arg
CCG
[ENA]
¢þ
>WENV180966735
ODUR01001661
[ODUR] human metagenome; G_DNA_Anterior nares
992
918
-
Arg
CCG
[ENA]
¢þ
>WENV180967080
ODUS01021814
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
167
241
+
Arg
CCG
[ENA]
¢þ
>WENV180989561
ODVM01002491
[ODVM] human metagenome; G_DNA_Anterior nares
395
469
+
Arg
CCG
[ENA]
¢þ
>WENV181000324
ODVU01005420
[ODVU] human metagenome; G_DNA_Anterior nares
414
488
+
Arg
CCG
[ENA]
¢þ
>WENV181010099
ODWG01000794
[ODWG] human metagenome; G_DNA_Anterior nares
2356
2282
-
Arg
CCG
[ENA]
¢þ
>WENV181010100
ODWG01000847
[ODWG] human metagenome; G_DNA_Anterior nares
2130
2056
-
Arg
CCG
[ENA]
¢þ
>WENV181013003
ODWL01012426
[ODWL] human metagenome; G_DNA_Anterior nares
151
225
+
Arg
CCG
[ENA]
¢þ
>WENV181025085
ODWY01003472
[ODWY] human metagenome; G_DNA_Anterior nares
260
186
-
Arg
CCG
[ENA]
¢þ
>WENV181030362
ODXG01004937
[ODXG] human metagenome; G_DNA_Anterior nares
238
312
+
Arg
CCG
[ENA]
¢þ
>WENV181040312
ODXR01000003
[ODXR] human metagenome; G_DNA_Anterior nares
117137
117063
-
Arg
CCG
[ENA]
¢þ
>WENV181115901
OEES01007851
[OEES] human metagenome; G_DNA_Anterior nares
104
30
-
Arg
CCG
[ENA]
¢þ
>WENV181119565
OEFI01000292
[OEFI] human metagenome; G_DNA_Anterior nares
5024
4950
-
Arg
CCG
[ENA]
¢þ
>WENV181131107
OEFZ01009132
[OEFZ] human metagenome; G_DNA_Anterior nares
206
132
-
Arg
CCG
[ENA]
¢þ
>WENV181131388
OEGC01000014
[OEGC] human metagenome; G_DNA_Anterior nares
27125
27199
+
Arg
CCG
[ENA]
¢þ
>WENV181131792
OEGD01038710
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
276
350
+
Arg
CCG
[ENA]
¢þ
>WENV181212219
OFBN01000212
[OFBN] metagenome; hydrothermal vent
4363
4289
-
Arg
CCG
[ENA]
¢þ
>WENV181212301
OFBO01000134
[OFBO] metagenome; hydrothermal vent
377
303
-
Arg
CCG
[ENA]
¢þ
>WENV181212354
OFBP01000028
[OFBP] metagenome; hydrothermal vent
5286
5212
-
Arg
CCG
[ENA]
¢þ
>WENV181212458
OFBQ01000184
[OFBQ] metagenome; hydrothermal vent
5073
4999
-
Arg
CCG
[ENA]
¢þ
>WENV181212524
OFBR01000091
[OFBR] metagenome; hydrothermal vent
6781
6855
+
Arg
CCG
[ENA]
¢þ
>WENV181212597
OFBS01000103
[OFBS] metagenome; hydrothermal vent
5668
5594
-
Arg
CCG
[ENA]
¢þ
>WENV181212683
OFBT01000116
[OFBT] metagenome; hydrothermal vent
377
303
-
Arg
CCG
[ENA]
¢þ
>W141154892
AXLN01000010
Actinomycetota
Corynebacterium sp. KPL2004 [AXLN]
165127
165051
-
Arg
CCG
[ENA]
¡û
>W141154937
AXLO01000005
Actinomycetota
Corynebacterium sp. KPL1998 [AXLO]
205062
205138
+
Arg
CCG
[ENA]
¡û
>W141154975
AXLP01000002
Actinomycetota
Corynebacterium sp. KPL1996 [AXLP]
165385
165309
-
Arg
CCG
[ENA]
¡û
>W141155100
AXLS01000001
Actinomycetota
Corynebacterium sp. KPL1986 [AXLS]
294045
293969
-
Arg
CCG
[ENA]
¡û
>W141155188
AXLT01000007
Actinomycetota
Corynebacterium sp. KPL1860 [AXLT]
184085
184159
+
Arg
CCG
[ENA]
¡û
>W141155243
AXLU01000028
Actinomycetota
Corynebacterium sp. KPL1859 [AXLU]
42514
42438
-
Arg
CCG
[ENA]
¡û
>W141155286
AXLV01000005
Actinomycetota
Corynebacterium sp. KPL1857 [AXLV]
693119
693193
+
Arg
CCG
[ENA]
¡û
>W141155325
AXLW01000006
Actinomycetota
Corynebacterium sp. KPL1856 [AXLW]
273691
273617
-
Arg
CCG
[ENA]
¡û
>W141155367
AXLX01000009
Actinomycetota
Corynebacterium sp. KPL1855 [AXLX]
113150
113226
+
Arg
CCG
[ENA]
¡û
>W141155418
AXLY01000003
Actinomycetota
Corynebacterium sp. KPL1824 [AXLY]
285237
285161
-
Arg
CCG
[ENA]
¡û
>W141155495
AXLZ01000013
Actinomycetota
Corynebacterium sp. KPL1821 [AXLZ]
278640
278566
-
Arg
CCG
[ENA]
¡û
>W141155547
AXMA01000011
Actinomycetota
Corynebacterium sp. KPL1818 [AXMA]
27461
27387
-
Arg
CCG
[ENA]
¡û
>W141155590
AXMB01000007
Actinomycetota
Corynebacterium sp. KPL1817 [AXMB]
274559
274485
-
Arg
CCG
[ENA]
¡û
>W141155624
AXMC01000009
Actinomycetota
Corynebacterium sp. KPL1814 [AXMC]
42835
42759
-
Arg
CCG
[ENA]
¡û
>WENV182629269
OJKS01000009
[OJKS] metagenome; surface
29363
29289
-
Arg
CCG
[ENA]
¢þ
>WENV182629568
OJKT01000328
[OJKT] metagenome; surface
498
424
-
Arg
CCG
[ENA]
¢þ
>WENV182629890
OJKV01000631
[OJKV] metagenome; surface
323
397
+
Arg
CCG
[ENA]
¢þ
>WENV182640830
OJLE01000044
[OJLE] metagenome; surface
54851
54777
-
Arg
CCG
[ENA]
¢þ
>WENV182642170
OJLL01002875
[OJLL] metagenome; surface
1559
1633
+
Arg
CCG
[ENA]
¢þ
>WENV182642171
OJLL01002889
[OJLL] metagenome; surface
1562
1636
+
Arg
CCG
[ENA]
¢þ
>WENV182642763
OJLP01000289
[OJLP] metagenome; surface
647
721
+
Arg
CCG
[ENA]
¢þ
>WENV182642992
OJLS01000046
[OJLS] metagenome; surface
14205
14131
-
Arg
CCG
[ENA]
¢þ
>WENV182643907
OJLW01002804
[OJLW] metagenome; surface
2145
2219
+
Arg
CCG
[ENA]
¢þ
>WENV182645226
OJLY01005395
[OJLY] metagenome; surface
1531
1457
-
Arg
CCG
[ENA]
¢þ
>WENV182646208
OJMA01000229
[OJMA] metagenome; surface
3392
3466
+
Arg
CCG
[ENA]
¢þ
>WENV182646624
OJMC01000102
[OJMC] metagenome; surface
5669
5595
-
Arg
CCG
[ENA]
¢þ
>WENV182671768
OJNM01002220
[OJNM] metagenome; surface
1483
1409
-
Arg
CCG
[ENA]
¢þ
>WENV182803960
OJUR01001211
[OJUR] human gut metagenome; human gut
229
303
+
Arg
CCG
[ENA]
¢þ
>WENV182811952
OJXO01000015
[OJXO] human gut metagenome; human gut
65324
65398
+
Arg
CCG
[ENA]
¢þ
>WENV182812182
OJXQ01002752
[OJXQ] human gut metagenome; human gut
214
288
+
Arg
CCG
[ENA]
¢þ
>WENV182827800
OKDC01001357
[OKDC] human gut metagenome; human gut
306
380
+
Arg
CCG
[ENA]
¢þ
>WENV182828881
OKDK01000504
[OKDK] human gut metagenome; human gut
930
1004
+
Arg
CCG
[ENA]
¢þ
>WENV182829072
OKDM01000021
[OKDM] human gut metagenome; human gut
65324
65398
+
Arg
CCG
[ENA]
¢þ
>WENV182833913
OKEX01000001
[OKEX] human gut metagenome; human gut
123416
123342
-
Arg
CCG
[ENA]
¢þ
>WENV182833984
OKEY01000017
[OKEY] human gut metagenome; human gut
11958
12032
+
Arg
CCG
[ENA]
¢þ
>WENV182855526
OKNB01000098
[OKNB] human gut metagenome; human gut
14267
14193
-
Arg
CCG
[ENA]
¢þ
>WENV183090742
OLKE01000636
[OLKE] metagenome; surface
2749
2675
-
Arg
CCG
[ENA]
¢þ
>WENV183511291
OMJG01000006
[OMJG] food metagenome; Cotija cheese
40624
40550
-
Arg
CCG
[ENA]
¢þ
>C181144778
CP027001
Actinomycetota
Corynebacterium camporealensis CIP 105508 [CP027001]
1002453
1002379
-
Arg
CCG
-
¡û
>C191163666
CP039247
Actinomycetota
Corynebacterium endometrii LMM-1653 [CP039247]
1026692
1026618
-
Arg
CCG
-
¡û
>C191210976
LR134408
Actinomycetota
Corynebacterium segmentosum NCTC934 [LR134408]
970283
970209
-
Arg
CCG
-
¡û
>W09113475
ABYQ01000295
Actinomycetota
Corynebacterium pseudogenitalium ATCC 33035 [ABYQ]
57254
57180
-
Arg
CCG
[ENA]
¡û
>W09122376
ACGD01000001
Actinomycetota
Corynebacterium accolens ATCC 49725 [ACGD]
277038
276962
-
Arg
CCG
[ENA]
¡û
>W09127953
ACLJ01000020
Actinomycetota
Corynebacterium genitalium ATCC 33030 [ACLJ]
78
2
-
Arg
CCG
[ENA]
¡û
>W09135421
ACVP01000012
Actinomycetota
Corynebacterium tuberculostearicum SK141 [ACVP]
122986
122912
-
Arg
CCG
[ENA]
¡û
>W1910182614
BJNB01000001
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
137034
137108
+
Arg
CCG
[ENA]
¡û
>W1910442365
FWFE01000032
Actinomycetota
Corynebacterium casei JB4 [FWFE]
107839
107913
+
Arg
CCG
[ENA]
¡û
>W1810326713
PUGE01000002
Actinomycetota
Corynebacterium sp. J010B-136 [PUGE]
289458
289384
-
Arg
CCG
[ENA]
¡û
>C151005932
CP004350
Actinomycetota
Corynebacterium casei LMG S-19264 [CP004350]
1921679
1921755
+
Arg
CCG
[Ensembl]
¡û
>C151079733
CP011311
Actinomycetota
Corynebacterium camporealensis DSM 44610 [CP011311]
1003163
1003089
-
Arg
CCG
[Ensembl]
¡û
>W10116385
ADNS01000027
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
83098
83022
-
Arg
CCG
[ENA]
¡û
>W10127197
AEED01000095
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
41574
41498
-
Arg
CCG
[ENA]
¡û
>W1511356288
JRUB01000003
Actinomycetota
Corynebacterium camporealensis CIP 105508 [JRUB]
188151
188225
+
Arg
CCG
[ENA]
¡û
>W11121054
ADNS01000027
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
83098
83022
-
Arg
CCG
[ENA]
¡û
>W1511439774
JUOH01000021
Actinomycetota
Corynebacterium aurimucosum 911_CAUR [JUOH]
107672
107746
+
Arg
CCG
[ENA]
¡û
>W1511448438
JUZU01000070
Actinomycetota
Corynebacterium aurimucosum 620_CAUR [JUZU]
56943
56869
-
Arg
CCG
[ENA]
¡û
>W1511471099
JVXO01000045
Actinomycetota
Corynebacterium aurimucosum 1237_CAUR [JVXO]
83329
83403
+
Arg
CCG
[ENA]
¡û
>W1511472665
JVZP01000087
Actinomycetota
Cutibacterium acnes 119_PAVI [JVZP]
107652
107726
+
Arg
CCG
[ENA]
¡û
>W1511473135
JWAB01001457
Actinomycetota
Corynebacterium aurimucosum 118_CAUR [JWAB]
58467
58393
-
Arg
CCG
[ENA]
¡û
>W11134685
AEED01000095
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
41574
41498
-
Arg
CCG
[ENA]
¡û
>C161070422
CP014279
Actinomycetota
Corynebacterium stationis ATCC 6872 [CP014279]
1784505
1784581
+
Arg
CCG
[Ensembl]
¡û
>W121127419
CAFW01000089
Actinomycetota
Corynebacterium casei UCMA 3821 [CAFW]
72642
72718
+
Arg
CCG
[ENA]
¡û
>W1610920899
LSTQ01000001
Actinomycetota
Corynebacterium stationis [LSTQ]
275249
275325
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK