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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155332 (125 seq.)
>W1710883644
LMVY01000028
Actinomycetota
Mycobacterium avium subsp. hominissuis [LMVY]
54742
54666
-
Leu
TAA
[ENA]
¡û
>W1711007806
LQPL01000020
Actinomycetota
Mycobacterium paraense [LQPL]
231650
231726
+
Leu
TAA
[ENA]
¡û
>W1711080645
LSRE01000050
Actinomycetota
Tsukamurella pseudospumae [LSRE]
268171
268247
+
Leu
TAA
[ENA]
¡û
>W1711080699
LSRF01000058
Actinomycetota
Tsukamurella pseudospumae [LSRF]
1033096
1033020
-
Leu
TAA
[ENA]
¡û
>W1711169821
LVZK01000001
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
1059036
1059110
+
Leu
TAA
[ENA]
¡û
>W1711278423
LZJS01000154
Actinomycetota
Mycobacterium colombiense [LZJS]
4161
4235
+
Leu
TAA
[ENA]
¡û
>W1711279070
LZKG01000123
Actinomycetota
Mycolicibacter sinensis sinense [LZKG]
11322
11396
+
Leu
TAA
[ENA]
¡û
>W1711281500
LZMF01000126
Actinomycetota
Mycolicibacter sinensis sinense [LZMF]
17796
17720
-
Leu
TAA
[ENA]
¡û
>W1711492265
MKKG01000011
Actinomycetota
Gordonia sp. CNJ-863 [MKKG]
182126
182050
-
Leu
TAA
[ENA]
¡û
>W1711492347
MKKI01000002
Actinomycetota
Corynebacterium sp. CNJ-954 [MKKI]
23547
23621
+
Leu
TAA
[ENA]
¡û
>W1711539240
MLYX02000001
Actinomycetota
Rhodococcus sp. M8 [MLYX]
3354269
3354343
+
Leu
TAA
[ENA]
¡û
>W1711772818
MVHR01000044
Actinomycetota
Mycobacterium heidelbergense [MVHR]
26301
26225
-
Leu
TAA
[ENA]
¡û
>W1711773686
MVIK01000063
Actinomycetota
Mycobacterium shinjukuense [MVIK]
4445
4521
+
Leu
TAA
[ENA]
¡û
>W131239466
BANS01000001
Actinomycetota
Gordonia amicalis NBRC 100051 [BANS]
54377
54303
-
Leu
TAA
[ENA]
¡û
>WENV180697553
ODDE01001227
[ODDE] human metagenome; G_DNA_Supragingival plaque
409
484
+
Leu
TAA
[ENA]
¢þ
>WENV180726760
ODGU01000451
[ODGU] human metagenome; G_DNA_Supragingival plaque
411
486
+
Leu
TAA
[ENA]
¢þ
>WENV180732865
ODGY01006321
[ODGY] human metagenome; G_DNA_Supragingival plaque
1437
1362
-
Leu
TAA
[ENA]
¢þ
>WENV180733847
ODGZ01001018
[ODGZ] human metagenome; G_DNA_Supragingival plaque
408
483
+
Leu
TAA
[ENA]
¢þ
>WENV180735558
ODHB01000018
[ODHB] human metagenome; G_DNA_Supragingival plaque
77267
77192
-
Leu
TAA
[ENA]
¢þ
>WENV180739056
ODHD01003806
[ODHD] human metagenome; G_DNA_Supragingival plaque
1723
1798
+
Leu
TAA
[ENA]
¢þ
>WENV180750010
ODHS01000239
[ODHS] human metagenome; G_DNA_Supragingival plaque
3452
3378
-
Leu
TAA
[ENA]
¢þ
>WENV180777248
ODIL01000655
[ODIL] human metagenome; G_DNA_Supragingival plaque
8797
8722
-
Leu
TAA
[ENA]
¢þ
>WENV180778254
ODIM01002363
[ODIM] human metagenome; G_DNA_Supragingival plaque
4938
4862
-
Leu
TAA
[ENA]
¢þ
>WENV180781972
ODIP01010582
[ODIP] human metagenome; G_DNA_Supragingival plaque
1434
1359
-
Leu
TAA
[ENA]
¢þ
>WENV180786771
ODIS01000169
[ODIS] human metagenome; G_DNA_Supragingival plaque
34956
34881
-
Leu
TAA
[ENA]
¢þ
>WENV180795953
ODJB01000728
[ODJB] human metagenome; G_DNA_Supragingival plaque
15938
15863
-
Leu
TAA
[ENA]
¢þ
>WENV180803946
ODJG01000192
[ODJG] human metagenome; G_DNA_Supragingival plaque
46843
46767
-
Leu
TAA
[ENA]
¢þ
>WENV180813253
ODJO01000231
[ODJO] human metagenome; G_DNA_Supragingival plaque
37090
37014
-
Leu
TAA
[ENA]
¢þ
>WENV180833994
ODKD01001683
[ODKD] human metagenome; G_DNA_Supragingival plaque
2702
2777
+
Leu
TAA
[ENA]
¢þ
>WENV180836210
ODKE01065226
[ODKE] human metagenome; G_DNA_Supragingival plaque
502
427
-
Leu
TAA
[ENA]
¢þ
>WENV180843696
ODKN01008349
[ODKN] human metagenome; G_DNA_Supragingival plaque
1517
1442
-
Leu
TAA
[ENA]
¢þ
>WENV180846688
ODKT01019008
[ODKT] human metagenome; G_DNA_Supragingival plaque
2032
1957
-
Leu
TAA
[ENA]
¢þ
>WENV180860231
ODLD01033751
[ODLD] human metagenome; G_DNA_Supragingival plaque
486
561
+
Leu
TAA
[ENA]
¢þ
>WENV180888916
ODMN01005964
[ODMN] human metagenome; G_DNA_Supragingival plaque
1657
1732
+
Leu
TAA
[ENA]
¢þ
>WENV180925015
ODTK01031200
[ODTK] human metagenome; G_DNA_Supragingival plaque
712
787
+
Leu
TAA
[ENA]
¢þ
>WENV180927161
ODTM01000019
[ODTM] human metagenome; G_DNA_Supragingival plaque
4078
4153
+
Leu
TAA
[ENA]
¢þ
>WENV180933268
ODTR01000004
[ODTR] human metagenome; G_DNA_Supragingival plaque
161912
161838
-
Leu
TAA
[ENA]
¢þ
>WENV180934451
ODTS01000085
[ODTS] human metagenome; G_DNA_Subgingival plaque
35591
35665
+
Leu
TAA
[ENA]
¢þ
>WENV180939649
ODTX01063923
[ODTX] human metagenome; G_DNA_Supragingival plaque
526
450
-
Leu
TAA
[ENA]
¢þ
>W141092526
AVAE01000001
Actinomycetota
Rhodococcus aetherivorans BCP1 [AVAE]
902187
902261
+
Leu
TAA
[ENA]
¡û
>WENV180944998
ODUC01056264
[ODUC] human metagenome; G_DNA_Supragingival plaque
588
513
-
Leu
TAA
[ENA]
¢þ
>WENV180958763
ODUL01036439
[ODUL] human metagenome; G_DNA_Supragingival plaque
17
92
+
Leu
TAA
[ENA]
¢þ
>WENV180964274
ODUO01000877
[ODUO] human metagenome; G_DNA_Supragingival plaque
1664
1739
+
Leu
TAA
[ENA]
¢þ
>WENV180973849
ODUW01022396
[ODUW] human metagenome; G_DNA_Supragingival plaque
1
76
+
Leu
TAA
[ENA]
¢þ
>WENV180986531
ODVK01000060
[ODVK] human metagenome; G_DNA_Supragingival plaque
9883
9958
+
Leu
TAA
[ENA]
¢þ
>WENV180998579
ODVT01000821
[ODVT] human metagenome; G_DNA_Buccal mucosa
3305
3380
+
Leu
TAA
[ENA]
¢þ
>WENV181002636
ODVX01000957
[ODVX] human metagenome; G_DNA_Supragingival plaque
4093
4168
+
Leu
TAA
[ENA]
¢þ
>WENV181007670
ODWE01000437
[ODWE] human metagenome; G_DNA_Supragingival plaque
32559
32484
-
Leu
TAA
[ENA]
¢þ
>WENV181019160
ODWU01000905
[ODWU] human metagenome; G_DNA_Supragingival plaque
408
483
+
Leu
TAA
[ENA]
¢þ
>WENV181030011
ODXF01018448
[ODXF] human metagenome; G_DNA_Supragingival plaque
597
522
-
Leu
TAA
[ENA]
¢þ
>WENV181050650
ODYD01038083
[ODYD] human metagenome; G_DNA_Supragingival plaque
613
538
-
Leu
TAA
[ENA]
¢þ
>WENV181063301
ODYP01000371
[ODYP] human metagenome; G_DNA_Supragingival plaque
9865
9940
+
Leu
TAA
[ENA]
¢þ
>WENV181068220
ODZI01185096
[ODZI] human metagenome; G_DNA_Supragingival plaque
167
241
+
Leu
TAA
[ENA]
¢þ
>WENV181070055
OEAE01000186
[OEAE] human metagenome; G_DNA_Supragingival plaque
1812
1887
+
Leu
TAA
[ENA]
¢þ
>WENV181076735
OEAP01012210
[OEAP] human metagenome; G_DNA_Supragingival plaque
411
486
+
Leu
TAA
[ENA]
¢þ
>WENV181082531
OEAV01000040
[OEAV] human metagenome; G_DNA_Supragingival plaque
76112
76037
-
Leu
TAA
[ENA]
¢þ
>WENV181090358
OEBC01000285
[OEBC] human metagenome; G_DNA_Supragingival plaque
408
483
+
Leu
TAA
[ENA]
¢þ
>WENV181107823
OEEI01025401
[OEEI] human metagenome; G_DNA_Supragingival plaque
662
738
+
Leu
TAA
[ENA]
¢þ
>WENV181138180
OEGJ01150748
[OEGJ] human metagenome; G_DNA_Supragingival plaque
62
136
+
Leu
TAA
[ENA]
¢þ
>WENV181143688
OEHM01004800
[OEHM] human metagenome; G_DNA_Supragingival plaque
1394
1319
-
Leu
TAA
[ENA]
¢þ
>WENV181145835
OEHQ01000141
[OEHQ] human metagenome; G_DNA_Supragingival plaque
46709
46634
-
Leu
TAA
[ENA]
¢þ
>WENV181156298
OEIE01008664
[OEIE] human metagenome; G_DNA_Supragingival plaque
409
484
+
Leu
TAA
[ENA]
¢þ
>WENV181160560
OEIK01014097
[OEIK] human metagenome; G_DNA_Supragingival plaque
1523
1448
-
Leu
TAA
[ENA]
¢þ
>WENV181178001
OEJS01039626
[OEJS] human metagenome; G_DNA_Supragingival plaque
710
635
-
Leu
TAA
[ENA]
¢þ
>WENV181180056
OEJT01060461
[OEJT] human metagenome; G_DNA_Supragingival plaque
121
46
-
Leu
TAA
[ENA]
¢þ
>WENV181180393
OEJU01000043
[OEJU] human metagenome; G_DNA_Supragingival plaque
76102
76027
-
Leu
TAA
[ENA]
¢þ
>WENV181182490
OEJV01012905
[OEJV] human metagenome; G_DNA_Supragingival plaque
35
110
+
Leu
TAA
[ENA]
¢þ
>W141143107
AWSB01000016
Actinomycetota
Actinobaculum sp. oral taxon 183 oral taxon 183 str. F0552 [AWSB]
4092
4168
+
Leu
TAA
[ENA]
¡û
>W141200026
AYXO01000001
Actinomycetota
Gordonia alkanivorans CGMCC 6845 [AYXO]
143444
143368
-
Leu
TAA
[ENA]
¡û
>W141202644
AZHI01000108
Actinomycetota
Rhodococcus rhodochrous ATCC 21198 [AZHI]
72848
72922
+
Leu
TAA
[ENA]
¡û
>W141243886
CAJY01000004
Actinomycetota
Tsukamurella sp. 1534 [CAJY]
49087
49161
+
Leu
TAA
[ENA]
¡û
>W141256038
CBVP010000094
Actinomycetota
Gordonia alkanivorans s104 [CBVP]
7346
7270
-
Leu
TAA
[ENA]
¡û
>C08003914
AM942444
Actinomycetota
Corynebacterium urealyticum DSM 7109 [AM942444]
710583
710659
+
Leu
TAA
[Ensembl]
¡û
>WENV183508554
OMHE01000779
[OMHE] human oral metagenome; human oral
1724
1650
-
Leu
TAA
[ENA]
¢þ
>WENV183511858
OMJG01006670
[OMJG] food metagenome; Cotija cheese
104
28
-
Leu
TAA
[ENA]
¢þ
>WENV170566526
FKKE01043452
[FKKE] freshwater metagenome; freshwater
1931
2005
+
Leu
TAA
[ENA]
¢þ
>WENV170653291
JRYI01051651
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
160
234
+
Leu
TAA
[ENA]
¢þ
>WENV170725993
LSQX01364147
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
21283
21207
-
Leu
TAA
[ENA]
¢þ
>C181057691
CP022095
Actinomycetota
Mycobacterium avium subsp. paratuberculosis FDAARGOS_305 [CP022095]
4506971
4506896
-
Leu
TAA
-
¡û
>C181181640
CP029604
Actinomycetota
Gordonia terrae NRRL B-16283 [CP029604]
1873393
1873319
-
Leu
TAA
-
¡û
>C181226715
LT906481
Actinomycetota
Corynebacterium urealyticum NCTC12011 [LT906481]
21514
21588
+
Leu
TAA
-
¡û
>C191002550
AP018496
Actinomycetota
Mycobacterium marinum ATCC 927 [AP018496]
5276325
5276251
-
Leu
TAA
-
¡û
>C191020802
CP022580
Actinomycetota
Gordonia rubripertincta CWB2 [CP022580]
1736647
1736572
-
Leu
TAA
-
¡û
>C191050800
CP027114
Actinomycetota
Gordonia alkanivorans YC-RL2 [CP027114]
4350972
4351047
+
Leu
TAA
-
¡û
>C191115006
CP033909
Actinomycetota
Mycobacterium avium subsp. paratuberculosis MAPK_JJ1/13 [CP033909]
989504
989579
+
Leu
TAA
-
¡û
>C191178127
CP040503
Actinomycetota
Actinomyces sp. oral taxon 848 str. F0332 [CP040503]
1896191
1896265
+
Leu
TAA
-
¡û
>C191208411
LR134353
Actinomycetota
Mycolicibacterium flavescens NCTC10271 [LR134353]
1080168
1080243
+
Leu
TAA
-
¡û
>W09109104
ABTV01000019
Actinomycetota
Gordonia bronchialis DSM 43247 [ABTV]
34237
34163
-
Leu
TAA
[ENA]
¡û
>W09134717
ACUY01000018
Actinomycetota
Actinomyces sp. oral taxon 848 oral taxon 848 str. F0332 [ACUY]
13177
13251
+
Leu
TAA
[ENA]
¡û
>W141756186
JNXA01000002
Actinomycetota
Gordonia terrae [JNXA]
230535
230609
+
Leu
TAA
[ENA]
¡û
>W1910408156
FVEC01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 301 [FVEC]
953006
952931
-
Leu
TAA
[ENA]
¡û
>W1911241412
NSEX01000017
Actinomycetota
Mycobacterium avium FLAC0346 [NSEX]
2755
2830
+
Leu
TAA
[ENA]
¡û
>W1911241821
NSFF01000009
Actinomycetota
Mycobacterium avium FLAC0161 [NSFF]
346748
346823
+
Leu
TAA
[ENA]
¡û
>W1810050242
PCZU01000124
Actinomycetota
Rhodococcus sp. ENV425 [PCZU]
2075
2149
+
Leu
TAA
[ENA]
¡û
>C151013283
CP006842
Actinomycetota
Corynebacterium glyciniphilum AJ 3170 [CP006842]
1124714
1124788
+
Leu
TAA
[Ensembl]
¡û
>C151045582
CP009215
Actinomycetota
Corynebacterium ureicelerivorans IMMIB RIV-2301 [CP009215]
787979
788055
+
Leu
TAA
[Ensembl]
¡û
>C151084436
CP011545
Actinomycetota
Corynebacterium testudinoris DSM 44614 [CP011545]
860763
860839
+
Leu
TAA
[Ensembl]
¡û
>C10107088
CP001802
Actinomycetota
Gordonia bronchialis DSM 43247 [CP001802]
1680912
1680838
-
Leu
TAA
[Ensembl]
¡û
>W11168080
AFNR01000325
Actinomycetota
Mycobacterium avium subsp. paratuberculosis CLIJ644 [AFNR]
10048
9972
-
Leu
TAA
[ENA]
¡û
>W11168124
AFNS01000346
Actinomycetota
Mycobacterium avium subsp. paratuberculosis CLIJ361 [AFNS]
4185
4109
-
Leu
TAA
[ENA]
¡û
>W11170034
AFPD01000140
Actinomycetota
Mycobacterium avium subsp. paratuberculosis Pt144 [AFPD]
8513
8437
-
Leu
TAA
[ENA]
¡û
>W11184665
BACI01000033
Actinomycetota
Gordonia alkanivorans NBRC 16433 [BACI]
54707
54631
-
Leu
TAA
[ENA]
¡û
>W1610051039
BBGK01001153
Actinomycetota
Gordonia amicalis NBRC 100051 = JCM 11271 [BBGK]
285
359
+
Leu
TAA
[ENA]
¡û
>W1610051099
BBGN01000113
Actinomycetota
Gordonia westfalica JCM 11757 [BBGN]
1806
1882
+
Leu
TAA
[ENA]
¡û
>W1610080409
BDCI01000022
Actinomycetota
Nocardia vulneris [BDCI]
51796
51722
-
Leu
TAA
[ENA]
¡û
>W121126697
BAHE01000024
Actinomycetota
Gordonia namibiensis NBRC 108229 [BAHE]
79228
79152
-
Leu
TAA
[ENA]
¡û
>W1610601099
LFOE01000047
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [LFOE]
20582
20506
-
Leu
TAA
[ENA]
¡û
>W1610638751
LIYC01000004
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
153984
154060
+
Leu
TAA
[ENA]
¡û
>W1610745570
LMVY01000028
Actinomycetota
Mycobacterium avium subsp. hominissuis [LMVY]
54742
54666
-
Leu
TAA
[ENA]
¡û
>W1610919512
LSRE01000050
Actinomycetota
Tsukamurella pseudospumae [LSRE]
268171
268247
+
Leu
TAA
[ENA]
¡û
>W1610919566
LSRF01000058
Actinomycetota
Tsukamurella pseudospumae [LSRF]
1033096
1033020
-
Leu
TAA
[ENA]
¡û
>W1610979018
LVZK01000001
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
1059036
1059110
+
Leu
TAA
[ENA]
¡û
>W1611037708
LZJS01000154
Actinomycetota
Mycobacterium colombiense [LZJS]
4161
4235
+
Leu
TAA
[ENA]
¡û
>W1611038355
LZKG01000123
Actinomycetota
Mycolicibacter sinensis sinense [LZKG]
11322
11396
+
Leu
TAA
[ENA]
¡û
>W1611040785
LZMF01000126
Actinomycetota
Mycolicibacter sinensis sinense [LZMF]
17796
17720
-
Leu
TAA
[ENA]
¡û
>W1710047438
BBGK01001153
Actinomycetota
Gordonia amicalis NBRC 100051 = JCM 11271 [BBGK]
285
359
+
Leu
TAA
[ENA]
¡û
>W1710047498
BBGN01000113
Actinomycetota
Gordonia westfalica JCM 11757 [BBGN]
1806
1882
+
Leu
TAA
[ENA]
¡û
>W1710078968
BDCI01000022
Actinomycetota
Nocardia vulneris [BDCI]
51796
51722
-
Leu
TAA
[ENA]
¡û
>W1710085326
BDNG01000070
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDNG]
2649
2725
+
Leu
TAA
[ENA]
¡û
>W1710086378
BDOB01000074
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDOB]
2650
2726
+
Leu
TAA
[ENA]
¡û
>W1710086829
BDOK01000023
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDOK]
21871
21795
-
Leu
TAA
[ENA]
¡û
>W1710527892
FNLM01000034
Actinomycetota
Gordonia westfalica [FNLM]
2159671
2159747
+
Leu
TAA
[ENA]
¡û
>W1710608178
FXAR01000008
Actinomycetota
Corynebacterium pollutisoli [FXAR]
144022
143946
-
Leu
TAA
[ENA]
¡û
>W1710742467
LGSB01000046
Actinomycetota
Mycobacterium avium subsp. paratuberculosis [LGSB]
2691
2767
+
Leu
TAA
[ENA]
¡û
>W1710774582
LIYC01000004
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
153984
154060
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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