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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155366 (68 seq.)
>WENV180318122
OBKL01084766
[OBKL] soil metagenome; Alaskan Permafrost
13
89
+
Phe
GAA
[ENA]
¢þ
>WENV180690286
OCZS010001923
[OCZS] soil metagenome; soil
1862
1936
+
Phe
GAA
[ENA]
¢þ
>WENV180690751
OCZS010022576
[OCZS] soil metagenome; soil
119
193
+
Phe
GAA
[ENA]
¢þ
>WENV180728182
ODGU01029213
[ODGU] human metagenome; G_DNA_Supragingival plaque
1010
936
-
Phe
GAA
[ENA]
¢þ
>WENV180734636
ODGZ01016048
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1094
1169
+
Phe
GAA
[ENA]
¢þ
>WENV180735750
ODHB01000531
[ODHB] human metagenome; G_DNA_Supragingival plaque
14317
14393
+
Phe
GAA
[ENA]
¢þ
>WENV180749809
ODHS01000031
[ODHS] human metagenome; G_DNA_Supragingival plaque
90971
90897
-
Phe
GAA
[ENA]
¢þ
>WENV180755090
ODHU01013970
[ODHU] human metagenome; G_DNA_Supragingival plaque
1069
993
-
Phe
GAA
[ENA]
¢þ
>WENV180777583
ODIL01021134
[ODIL] human metagenome; G_DNA_Supragingival plaque
75
1
-
Phe
GAA
[ENA]
¢þ
>WENV180781897
ODIP01007278
[ODIP] human metagenome; G_DNA_Supragingival plaque
820
745
-
Phe
GAA
[ENA]
¢þ
>WENV180788675
ODIS01094037
[ODIS] human metagenome; G_DNA_Supragingival plaque
594
670
+
Phe
GAA
[ENA]
¢þ
>WENV180797917
ODJB01161981
[ODJB] human metagenome; G_DNA_Supragingival plaque
267
343
+
Phe
GAA
[ENA]
¢þ
>WENV180804695
ODJG01009444
[ODJG] human metagenome; G_DNA_Supragingival plaque
912
837
-
Phe
GAA
[ENA]
¢þ
>WENV180823229
ODJW01009847
[ODJW] human metagenome; G_DNA_Supragingival plaque
982
1058
+
Phe
GAA
[ENA]
¢þ
>WENV180833084
ODKC01013018
[ODKC] human metagenome; G_DNA_Supragingival plaque
82
7
-
Phe
GAA
[ENA]
¢þ
>WENV180834502
ODKD01040343
[ODKD] human metagenome; G_DNA_Supragingival plaque
203
127
-
Phe
GAA
[ENA]
¢þ
>WENV180843929
ODKN01018999
[ODKN] human metagenome; G_DNA_Supragingival plaque
805
880
+
Phe
GAA
[ENA]
¢þ
>WENV180846727
ODKT01021034
[ODKT] human metagenome; G_DNA_Supragingival plaque
2136
2060
-
Phe
GAA
[ENA]
¢þ
>WENV180860084
ODLD01017114
[ODLD] human metagenome; G_DNA_Supragingival plaque
956
880
-
Phe
GAA
[ENA]
¢þ
>WENV180889456
ODMN01045127
[ODMN] human metagenome; G_DNA_Supragingival plaque
424
349
-
Phe
GAA
[ENA]
¢þ
>WENV180922987
ODTJ01026413
[ODTJ] human metagenome; G_DNA_Supragingival plaque
251
175
-
Phe
GAA
[ENA]
¢þ
>WENV180924564
ODTK01007714
[ODTK] human metagenome; G_DNA_Supragingival plaque
3461
3537
+
Phe
GAA
[ENA]
¢þ
>WENV180927732
ODTM01002981
[ODTM] human metagenome; G_DNA_Supragingival plaque
4358
4282
-
Phe
GAA
[ENA]
¢þ
>WENV180933294
ODTR01000012
[ODTR] human metagenome; G_DNA_Supragingival plaque
116848
116774
-
Phe
GAA
[ENA]
¢þ
>WENV180934396
ODTS01000011
[ODTS] human metagenome; G_DNA_Subgingival plaque
24154
24080
-
Phe
GAA
[ENA]
¢þ
>WENV180939921
ODTX01136573
[ODTX] human metagenome; G_DNA_Supragingival plaque
76
1
-
Phe
GAA
[ENA]
¢þ
>WENV180944547
ODUC01022529
[ODUC] human metagenome; G_DNA_Supragingival plaque
318
394
+
Phe
GAA
[ENA]
¢þ
>WENV180958280
ODUL01002013
[ODUL] human metagenome; G_DNA_Supragingival plaque
530
454
-
Phe
GAA
[ENA]
¢þ
>WENV180963915
ODUO01000027
[ODUO] human metagenome; G_DNA_Supragingival plaque
37690
37614
-
Phe
GAA
[ENA]
¢þ
>WENV180973398
ODUW01004801
[ODUW] human metagenome; G_DNA_Supragingival plaque
2599
2523
-
Phe
GAA
[ENA]
¢þ
>WENV180973616
ODUW01009700
[ODUW] human metagenome; G_DNA_Supragingival plaque
2241
2165
-
Phe
GAA
[ENA]
¢þ
>WENV180980677
ODVE01001058
[ODVE] human metagenome; G_DNA_Supragingival plaque
6819
6743
-
Phe
GAA
[ENA]
¢þ
>WENV180982668
ODVF01000262
[ODVF] human metagenome; G_DNA_Supragingival plaque
19087
19163
+
Phe
GAA
[ENA]
¢þ
>WENV180987735
ODVK01100678
[ODVK] human metagenome; G_DNA_Supragingival plaque
232
307
+
Phe
GAA
[ENA]
¢þ
>WENV181002286
ODVX01000176
[ODVX] human metagenome; G_DNA_Supragingival plaque
5228
5304
+
Phe
GAA
[ENA]
¢þ
>WENV181008367
ODWE01004344
[ODWE] human metagenome; G_DNA_Supragingival plaque
6352
6428
+
Phe
GAA
[ENA]
¢þ
>WENV181020469
ODWU01227507
[ODWU] human metagenome; G_DNA_Supragingival plaque
126
50
-
Phe
GAA
[ENA]
¢þ
>WENV181030058
ODXF01024181
[ODXF] human metagenome; G_DNA_Supragingival plaque
64
140
+
Phe
GAA
[ENA]
¢þ
>WENV181050151
ODYD01007499
[ODYD] human metagenome; G_DNA_Supragingival plaque
3071
3147
+
Phe
GAA
[ENA]
¢þ
>WENV181063697
ODYP01002616
[ODYP] human metagenome; G_DNA_Supragingival plaque
6384
6460
+
Phe
GAA
[ENA]
¢þ
>WENV181067919
ODZI01073410
[ODZI] human metagenome; G_DNA_Supragingival plaque
285
361
+
Phe
GAA
[ENA]
¢þ
>WENV181070582
OEAE01003588
[OEAE] human metagenome; G_DNA_Supragingival plaque
1346
1422
+
Phe
GAA
[ENA]
¢þ
>WENV181077560
OEAP01072780
[OEAP] human metagenome; G_DNA_Supragingival plaque
572
496
-
Phe
GAA
[ENA]
¢þ
>WENV181079364
OEAS01005428
[OEAS] human metagenome; G_DNA_Supragingival plaque
5468
5543
+
Phe
GAA
[ENA]
¢þ
>WENV181083056
OEAV01002151
[OEAV] human metagenome; G_DNA_Supragingival plaque
2390
2465
+
Phe
GAA
[ENA]
¢þ
>WENV181091132
OEBC01014057
[OEBC] human metagenome; G_DNA_Supragingival plaque
1932
2008
+
Phe
GAA
[ENA]
¢þ
>WENV181108096
OEEI01085776
[OEEI] human metagenome; G_DNA_Supragingival plaque
23
99
+
Phe
GAA
[ENA]
¢þ
>WENV181137843
OEGJ01034798
[OEGJ] human metagenome; G_DNA_Supragingival plaque
774
699
-
Phe
GAA
[ENA]
¢þ
>WENV181146155
OEHQ01001377
[OEHQ] human metagenome; G_DNA_Supragingival plaque
10290
10214
-
Phe
GAA
[ENA]
¢þ
>WENV181153163
OEIA01025405
[OEIA] human metagenome; G_DNA_Supragingival plaque
1175
1251
+
Phe
GAA
[ENA]
¢þ
>WENV181156314
OEIE01009316
[OEIE] human metagenome; G_DNA_Supragingival plaque
1153
1229
+
Phe
GAA
[ENA]
¢þ
>WENV181160792
OEIK01038301
[OEIK] human metagenome; G_DNA_Supragingival plaque
61
136
+
Phe
GAA
[ENA]
¢þ
>WENV181177301
OEJS01000547
[OEJS] human metagenome; G_DNA_Supragingival plaque
6566
6642
+
Phe
GAA
[ENA]
¢þ
>WENV181179271
OEJT01002603
[OEJT] human metagenome; G_DNA_Supragingival plaque
4467
4543
+
Phe
GAA
[ENA]
¢þ
>WENV181181844
OEJV01000402
[OEJV] human metagenome; G_DNA_Supragingival plaque
5133
5209
+
Phe
GAA
[ENA]
¢þ
>WENV183508639
OMHE01007698
[OMHE] human oral metagenome; human oral
439
363
-
Phe
GAA
[ENA]
¢þ
>WENV183706016
PDWI01002921
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5729
5653
-
Phe
GAA
[ENA]
¢þ
>WENV183711461
PDWI01070288
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2389
2313
-
Phe
GAA
[ENA]
¢þ
>WENV183713128
PDWI01125629
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
173
249
+
Phe
GAA
[ENA]
¢þ
>WENV183718849
PDWJ01006964
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
15573
15497
-
Phe
GAA
[ENA]
¢þ
>C191173846
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
2732952
2732876
-
Phe
GAA
-
¡û
>C191210861
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
2716619
2716543
-
Phe
GAA
-
¡û
>C191214576
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
2707367
2707291
-
Phe
GAA
-
¡û
>W1911575865
PDJP01000001
Actinomycetota
Propionibacteriaceae bacterium ES.041 [PDJP]
3800917
3800993
+
Phe
GAA
[ENA]
¡û
>C11114917
AP012204
Actinomycetota
Microlunatus phosphovorus NM-1 [AP012204]
768838
768760
-
Phe
GAA
[Ensembl]
¡û
>C121002953
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
2745291
2745215
-
Phe
GAA
[Ensembl]
¡û
>W1610074498
BCWS01000005
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
219266
219190
-
Phe
GAA
[ENA]
¡û
>W1710071616
BCWS01000005
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
219266
219190
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK