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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155690 (121 seq.)
>W1710870487
LMKO01000001
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
250519
250595
+
Arg
TCT
[ENA]
¡û
>W1710873767
LMNA01000030
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
21751
21675
-
Arg
TCT
[ENA]
¡û
>W1710893459
LNEU01000015
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
16940
16864
-
Arg
TCT
[ENA]
¡û
>W131160023
AQWD01000211
Betaproteobacteria
Oxalobacteraceae bacterium JGI 0001004-K23 [AQWD]
60618
60542
-
Arg
TCT
[ENA]
¡û
>W131178435
ARLO01000073
Betaproteobacteria
Curvibacter lanceolatus ATCC 14669 [ARLO]
290026
289950
-
Arg
TCT
[ENA]
¡û
>C011140
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
2503124
2503048
-
Arg
TCT
[Ensembl]
¡û
>WENV180006760
FLRY01285041
[FLRY] metagenome; saliva
151
75
-
Arg
TCT
[ENA]
¢þ
>WENV180012200
FLSK01256037
[FLSK] metagenome; saliva
203
127
-
Arg
TCT
[ENA]
¢þ
>WENV180016364
FSUS01000348
[FSUS] metagenome; soil
5496
5420
-
Arg
TCT
[ENA]
¢þ
>WENV180035721
FTLB01001212
[FTLB] metagenome; soil
258
182
-
Arg
TCT
[ENA]
¢þ
>WENV180040974
LLBZ010030759
[LLBZ] soil metagenome; soil from tomato rhizosphere
3925
3849
-
Arg
TCT
[ENA]
¢þ
>WENV180225888
OBBP01001100
[OBBP] human oral metagenome; human oral
1338
1262
-
Arg
TCT
[ENA]
¢þ
>WENV180298376
OBJA01302307
[OBJA] soil metagenome; sediment, water from around vicinity
99
23
-
Arg
TCT
[ENA]
¢þ
>WENV180551486
OCJF01072604
[OCJF] human oral metagenome; human oral
49
125
+
Arg
TCT
[ENA]
¢þ
>WENV180717562
ODGE01000054
[ODGE] human metagenome; G_DNA_Buccal mucosa
17775
17851
+
Arg
TCT
[ENA]
¢þ
>WENV180726199
ODGS01053484
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
242
318
+
Arg
TCT
[ENA]
¢þ
>WENV180727662
ODGU01009262
[ODGU] human metagenome; G_DNA_Supragingival plaque
769
845
+
Arg
TCT
[ENA]
¢þ
>WENV180731404
ODGW01000326
[ODGW] human metagenome; G_DNA_Supragingival plaque
2663
2739
+
Arg
TCT
[ENA]
¢þ
>WENV180733472
ODGZ01000093
[ODGZ] human metagenome; G_DNA_Supragingival plaque
41160
41084
-
Arg
TCT
[ENA]
¢þ
>WENV180736082
ODHB01004535
[ODHB] human metagenome; G_DNA_Supragingival plaque
1125
1049
-
Arg
TCT
[ENA]
¢þ
>WENV180746228
ODHM01020654
[ODHM] human metagenome; G_DNA_Buccal mucosa
176
252
+
Arg
TCT
[ENA]
¢þ
>WENV180749963
ODHS01000172
[ODHS] human metagenome; G_DNA_Supragingival plaque
43035
42959
-
Arg
TCT
[ENA]
¢þ
>WENV180755075
ODHU01012455
[ODHU] human metagenome; G_DNA_Supragingival plaque
1065
1141
+
Arg
TCT
[ENA]
¢þ
>WENV180776234
ODIK01024910
[ODIK] human metagenome; G_DNA_Tongue dorsum
829
753
-
Arg
TCT
[ENA]
¢þ
>WENV180777518
ODIL01013237
[ODIL] human metagenome; G_DNA_Supragingival plaque
821
745
-
Arg
TCT
[ENA]
¢þ
>WENV180778100
ODIM01000614
[ODIM] human metagenome; G_DNA_Supragingival plaque
12943
13019
+
Arg
TCT
[ENA]
¢þ
>WENV180787612
ODIS01009875
[ODIS] human metagenome; G_DNA_Supragingival plaque
1056
980
-
Arg
TCT
[ENA]
¢þ
>WENV180797496
ODJB01066650
[ODJB] human metagenome; G_DNA_Supragingival plaque
739
815
+
Arg
TCT
[ENA]
¢þ
>WENV180803883
ODJG01000142
[ODJG] human metagenome; G_DNA_Supragingival plaque
41049
40973
-
Arg
TCT
[ENA]
¢þ
>WENV180806299
ODJH01008283
[ODJH] human metagenome; G_DNA_Tongue dorsum
1320
1244
-
Arg
TCT
[ENA]
¢þ
>WENV180813601
ODJO01001372
[ODJO] human metagenome; G_DNA_Supragingival plaque
6747
6823
+
Arg
TCT
[ENA]
¢þ
>WENV180831929
ODKC01000255
[ODKC] human metagenome; G_DNA_Supragingival plaque
17510
17586
+
Arg
TCT
[ENA]
¢þ
>WENV180833717
ODKD01000132
[ODKD] human metagenome; G_DNA_Supragingival plaque
6636
6712
+
Arg
TCT
[ENA]
¢þ
>WENV180836183
ODKE01057591
[ODKE] human metagenome; G_DNA_Supragingival plaque
41
117
+
Arg
TCT
[ENA]
¢þ
>WENV180843280
ODKN01001488
[ODKN] human metagenome; G_DNA_Supragingival plaque
541
465
-
Arg
TCT
[ENA]
¢þ
>WENV180845225
ODKT01000021
[ODKT] human metagenome; G_DNA_Supragingival plaque
82504
82428
-
Arg
TCT
[ENA]
¢þ
>WENV180853326
ODKW01071356
[ODKW] human metagenome; G_DNA_Tongue dorsum
283
359
+
Arg
TCT
[ENA]
¢þ
>WENV180859230
ODLD01000096
[ODLD] human metagenome; G_DNA_Supragingival plaque
17796
17872
+
Arg
TCT
[ENA]
¢þ
>WENV180863051
ODLF01089016
[ODLF] human metagenome; G_DNA_Buccal mucosa
104
28
-
Arg
TCT
[ENA]
¢þ
>WENV180865123
ODLI01024605
[ODLI] human metagenome; G_DNA_Buccal mucosa
403
327
-
Arg
TCT
[ENA]
¢þ
>WENV180868515
ODLL01017647
[ODLL] human metagenome; G_DNA_Buccal mucosa
159
83
-
Arg
TCT
[ENA]
¢þ
>WENV180880804
ODLZ01060346
[ODLZ] human metagenome; G_DNA_Tongue dorsum
41
117
+
Arg
TCT
[ENA]
¢þ
>WENV180889884
ODMN01211644
[ODMN] human metagenome; G_DNA_Supragingival plaque
200
124
-
Arg
TCT
[ENA]
¢þ
>WENV180891708
ODMQ01006223
[ODMQ] human metagenome; G_DNA_Supragingival plaque
458
534
+
Arg
TCT
[ENA]
¢þ
>WENV180913079
ODSR01006429
[ODSR] human metagenome; G_DNA_Buccal mucosa
258
334
+
Arg
TCT
[ENA]
¢þ
>WENV180924710
ODTK01012578
[ODTK] human metagenome; G_DNA_Supragingival plaque
172
96
-
Arg
TCT
[ENA]
¢þ
>WENV180927598
ODTM01001600
[ODTM] human metagenome; G_DNA_Supragingival plaque
1892
1816
-
Arg
TCT
[ENA]
¢þ
>WENV180933789
ODTR01002601
[ODTR] human metagenome; G_DNA_Supragingival plaque
1877
1953
+
Arg
TCT
[ENA]
¢þ
>WENV180935156
ODTS01077345
[ODTS] human metagenome; G_DNA_Subgingival plaque
157
81
-
Arg
TCT
[ENA]
¢þ
>WENV180937727
ODTX01000045
[ODTX] human metagenome; G_DNA_Supragingival plaque
31941
32017
+
Arg
TCT
[ENA]
¢þ
>WENV180944393
ODUC01016169
[ODUC] human metagenome; G_DNA_Supragingival plaque
187
111
-
Arg
TCT
[ENA]
¢þ
>WENV180957968
ODUL01000051
[ODUL] human metagenome; G_DNA_Supragingival plaque
41093
41017
-
Arg
TCT
[ENA]
¢þ
>WENV180964245
ODUO01000748
[ODUO] human metagenome; G_DNA_Supragingival plaque
12917
12841
-
Arg
TCT
[ENA]
¢þ
>WENV180972719
ODUW01000071
[ODUW] human metagenome; G_DNA_Supragingival plaque
41091
41015
-
Arg
TCT
[ENA]
¢þ
>WENV180974654
ODUX01036860
[ODUX] human metagenome; G_DNA_Buccal mucosa
166
90
-
Arg
TCT
[ENA]
¢þ
>WENV180976662
ODUY01191271
[ODUY] human metagenome; G_DNA_Supragingival plaque
212
136
-
Arg
TCT
[ENA]
¢þ
>WENV180978295
ODUZ01041987
[ODUZ] human metagenome; G_DNA_Tongue dorsum
244
168
-
Arg
TCT
[ENA]
¢þ
>WENV180978681
ODVA01001325
[ODVA] human metagenome; G_DNA_Buccal mucosa
350
426
+
Arg
TCT
[ENA]
¢þ
>WENV180981021
ODVE01005377
[ODVE] human metagenome; G_DNA_Supragingival plaque
366
442
+
Arg
TCT
[ENA]
¢þ
>WENV180982455
ODVF01000022
[ODVF] human metagenome; G_DNA_Supragingival plaque
94971
94895
-
Arg
TCT
[ENA]
¢þ
>WENV180999021
ODVT01004761
[ODVT] human metagenome; G_DNA_Buccal mucosa
1336
1412
+
Arg
TCT
[ENA]
¢þ
>WENV181002683
ODVX01001200
[ODVX] human metagenome; G_DNA_Supragingival plaque
16979
17055
+
Arg
TCT
[ENA]
¢þ
>WENV181008355
ODWE01004242
[ODWE] human metagenome; G_DNA_Supragingival plaque
1815
1739
-
Arg
TCT
[ENA]
¢þ
>WENV181018889
ODWU01000169
[ODWU] human metagenome; G_DNA_Supragingival plaque
17479
17555
+
Arg
TCT
[ENA]
¢þ
>WENV181025637
ODXB01010245
[ODXB] human metagenome; G_DNA_Buccal mucosa
344
420
+
Arg
TCT
[ENA]
¢þ
>WENV181029611
ODXF01001013
[ODXF] human metagenome; G_DNA_Supragingival plaque
1872
1796
-
Arg
TCT
[ENA]
¢þ
>WENV181064823
ODYP01112334
[ODYP] human metagenome; G_DNA_Supragingival plaque
337
413
+
Arg
TCT
[ENA]
¢þ
>WENV181067078
ODZI01005884
[ODZI] human metagenome; G_DNA_Supragingival plaque
1851
1775
-
Arg
TCT
[ENA]
¢þ
>WENV181070027
OEAE01000141
[OEAE] human metagenome; G_DNA_Supragingival plaque
42054
41978
-
Arg
TCT
[ENA]
¢þ
>WENV181080541
OEAS01055148
[OEAS] human metagenome; G_DNA_Supragingival plaque
467
543
+
Arg
TCT
[ENA]
¢þ
>WENV181083886
OEAV01031306
[OEAV] human metagenome; G_DNA_Supragingival plaque
676
752
+
Arg
TCT
[ENA]
¢þ
>WENV181101204
OECM01015368
[OECM] human metagenome; G_DNA_Buccal mucosa
203
127
-
Arg
TCT
[ENA]
¢þ
>WENV181106889
OEEI01000583
[OEEI] human metagenome; G_DNA_Supragingival plaque
639
715
+
Arg
TCT
[ENA]
¢þ
>WENV181121055
OEFL01000266
[OEFL] human metagenome; G_DNA_Supragingival plaque
14651
14575
-
Arg
TCT
[ENA]
¢þ
>WENV181123006
OEFO01029171
[OEFO] soil metagenome; soil
138
214
+
Arg
TCT
[ENA]
¢þ
>WENV181123541
OEFQ01000013
[OEFQ] human metagenome; G_DNA_Supragingival plaque
122462
122538
+
Arg
TCT
[ENA]
¢þ
>WENV181137535
OEGJ01006317
[OEGJ] human metagenome; G_DNA_Supragingival plaque
1533
1457
-
Arg
TCT
[ENA]
¢þ
>WENV181143734
OEHM01007412
[OEHM] human metagenome; G_DNA_Supragingival plaque
1282
1358
+
Arg
TCT
[ENA]
¢þ
>WENV181146512
OEHQ01007824
[OEHQ] human metagenome; G_DNA_Supragingival plaque
517
441
-
Arg
TCT
[ENA]
¢þ
>WENV181160474
OEIK01010221
[OEIK] human metagenome; G_DNA_Supragingival plaque
573
497
-
Arg
TCT
[ENA]
¢þ
>WENV181166505
OEIU01000443
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
25209
25133
-
Arg
TCT
[ENA]
¢þ
>WENV181171388
OEIV010215234
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
449
373
-
Arg
TCT
[ENA]
¢þ
>WENV181177769
OEJS01016579
[OEJS] human metagenome; G_DNA_Supragingival plaque
157
81
-
Arg
TCT
[ENA]
¢þ
>WENV181178953
OEJT01000705
[OEJT] human metagenome; G_DNA_Supragingival plaque
2742
2666
-
Arg
TCT
[ENA]
¢þ
>WENV181180695
OEJU01000660
[OEJU] human metagenome; G_DNA_Supragingival plaque
18526
18602
+
Arg
TCT
[ENA]
¢þ
>WENV181182082
OEJV01002098
[OEJV] human metagenome; G_DNA_Supragingival plaque
1050
1126
+
Arg
TCT
[ENA]
¢þ
>WENV181367545
OFQB01010245
[OFQB] freshwater metagenome; Freshwater Lake
98
174
+
Arg
TCT
[ENA]
¢þ
>WENV181370083
OFQR01012951
[OFQR] freshwater metagenome; Freshwater Lake
552
476
-
Arg
TCT
[ENA]
¢þ
>WENV181370476
OFQS01019007
[OFQS] freshwater metagenome; Freshwater Lake
183
107
-
Arg
TCT
[ENA]
¢þ
>WENV181370702
OFQT01004438
[OFQT] freshwater metagenome; Freshwater Lake
513
437
-
Arg
TCT
[ENA]
¢þ
>W141276669
JADZ01000009
Betaproteobacteria
Curvibacter gracilis ATCC BAA-807 [JADZ]
134558
134634
+
Arg
TCT
[ENA]
¡û
>WENV170559063
CXWL01108777
[CXWL] groundwater metagenome; biofilm material
10060
9985
-
Arg
TCT
[ENA]
¢þ
>WENV170559355
CXWL01120185
[CXWL] groundwater metagenome; biofilm material
3258
3334
+
Arg
TCT
[ENA]
¢þ
>WENV170559405
CXWL01121727
[CXWL] groundwater metagenome; biofilm material
3036
2960
-
Arg
TCT
[ENA]
¢þ
>WENV170559507
CXWL01126339
[CXWL] groundwater metagenome; biofilm material
2262
2186
-
Arg
TCT
[ENA]
¢þ
>WENV170559550
CXWL01128240
[CXWL] groundwater metagenome; biofilm material
93
17
-
Arg
TCT
[ENA]
¢þ
>WENV170652575
JRYH01007079
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
15179
15103
-
Arg
TCT
[ENA]
¢þ
>WENV170652683
JRYH01014512
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1264
1340
+
Arg
TCT
[ENA]
¢þ
>WENV170708893
LNFM01000019
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
22101
22025
-
Arg
TCT
[ENA]
¢þ
>WENV170712663
LNFM01016150
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
189
265
+
Arg
TCT
[ENA]
¢þ
>C181102697
CP024608
Betaproteobacteria
Massilia violaceinigra B2 [CP024608]
6470495
6470419
-
Arg
TCT
-
¡û
>C181195940
CP031124
Betaproteobacteria
Ephemeroptericola cinctiostellae F02 [CP031124]
4933
4857
-
Arg
TCT
-
¡û
>C191209573
LR134378
Betaproteobacteria
Lautropia mirabilis NCTC12852 [LR134378]
1635369
1635445
+
Arg
TCT
-
¡û
>W1810062444
PDOC01000015
Betaproteobacteria
Massilia eurypsychrophila JCM 30074 [PDOC]
107664
107588
-
Arg
TCT
[ENA]
¡û
>SRA1003127
SRR002326.226836
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
177
101
-
Arg
TCT
[SRA]
>W1810387738
PXWF02000272
Betaproteobacteria
Massilia glaciei B448-2 [PXWF]
236
312
+
Arg
TCT
[ENA]
¡û
>W1810672011
QJTC01000002
Betaproteobacteria
Xylophilus ampelinus CECT 7646 [QJTC]
210003
210079
+
Arg
TCT
[ENA]
¡û
>C151100188
HG322949
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
3486029
3485953
-
Arg
TCT
[Ensembl]
¡û
>W11144235
AEQP01000008
Betaproteobacteria
Lautropia mirabilis ATCC 51599 [AEQP]
39050
38974
-
Arg
TCT
[ENA]
¡û
>C161037076
CP011774
Betaproteobacteria
Limnohabitans sp. 63ED37-2 [CP011774]
1060193
1060117
-
Arg
TCT
[Ensembl]
¡û
>W1610070473
BCTH01000027
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
175440
175516
+
Arg
TCT
[ENA]
¡û
>W1610093135
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
3515583
3515659
+
Arg
TCT
[ENA]
¡û
>W1610163429
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
3515583
3515659
+
Arg
TCT
[ENA]
¡û
>W1610732833
LMKO01000001
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
250519
250595
+
Arg
TCT
[ENA]
¡û
>W1610736113
LMNA01000030
Betaproteobacteria
Pseudorhodoferax sp. Leaf274 [LMNA]
21751
21675
-
Arg
TCT
[ENA]
¡û
>W1610753725
LNEU01000015
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
16940
16864
-
Arg
TCT
[ENA]
¡û
>W1710067846
BCTH01000027
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
175440
175516
+
Arg
TCT
[ENA]
¡û
>W1710096343
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
3515583
3515659
+
Arg
TCT
[ENA]
¡û
>W1710165096
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
3515583
3515659
+
Arg
TCT
[ENA]
¡û
>W1710568808
FOTW01000014
Betaproteobacteria
Rugamonas rubra [FOTW]
83424
83500
+
Arg
TCT
[ENA]
¡û
>W1710586007
FQWU01000002
Betaproteobacteria
Massilia sp. CF038 [FQWU]
427671
427595
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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