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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155696 (51 seq.)
>W1710880592
LMSL01000006
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
54248
54324
+
Arg
TCT
[ENA]
¡û
>C171063399
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
16019
15943
-
Arg
TCT
-
¡û
>w016573
AAQH01000001
Gammaproteobacteria
Bermanella marisrubri RED65 [AAQH]
147341
147268
-
Arg
TCT
[ENA]
¡û
>WENV180035725
FTLB01001621
[FTLB] metagenome; soil
117
41
-
Arg
TCT
[ENA]
¢þ
>WENV180283476
OBID01000219
[OBID] metagenome; sludge
9158
9082
-
Arg
TCT
[ENA]
¢þ
>WENV180695194
OCZS013165229
[OCZS] soil metagenome; soil
122
198
+
Arg
TCT
[ENA]
¢þ
>WENV181166580
OEIU01000699
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
13369
13293
-
Arg
TCT
[ENA]
¢þ
>WENV181172252
OEIV010565035
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
23
99
+
Arg
TCT
[ENA]
¢þ
>WENV183697507
OUNK010000066
[OUNK] metagenome; soil
22028
22104
+
Arg
TCT
[ENA]
¢þ
>WENV170557134
CXWL01019826
[CXWL] groundwater metagenome; biofilm material
2284
2360
+
Arg
TCT
[ENA]
¢þ
>C191003490
AP018560
Gammaproteobacteria
Aerosticca soli Dysh456 [AP018560]
2102583
2102507
-
Arg
TCT
-
¡û
>C191138622
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
1406701
1406625
-
Arg
TCT
-
¡û
>C191186027
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
3033351
3033275
-
Arg
TCT
-
¡û
>W141564949
JIBD01000016
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
586602
586526
-
Arg
TCT
[ENA]
¡û
>W141820709
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
4116477
4116401
-
Arg
TCT
[ENA]
¡û
>W141820787
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
1660303
1660379
+
Arg
TCT
[ENA]
¡û
>W141821282
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
706988
706912
-
Arg
TCT
[ENA]
¡û
>W1910896580
NFZS01000001
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
1960867
1960943
+
Arg
TCT
[ENA]
¡û
>W1911199819
NRDP01000030
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
34010
33934
-
Arg
TCT
[ENA]
¡û
>W1810477576
QAOX01000006
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
289709
289633
-
Arg
TCT
[ENA]
¡û
>W1810485576
QAVX01000010
Gammaproteobacteria
Dyella sp. C11 [QAVX]
6065
5989
-
Arg
TCT
[ENA]
¡û
>W1810597197
QGHC01000001
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
367544
367620
+
Arg
TCT
[ENA]
¡û
>W1810628324
QICJ01000001
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
230289
230213
-
Arg
TCT
[ENA]
¡û
>W1810783262
QQSY01000003
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
558650
558726
+
Arg
TCT
[ENA]
¡û
>W1810785104
QRBE01000008
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
80351
80275
-
Arg
TCT
[ENA]
¡û
>W1810785132
QRBF01000001
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
904678
904602
-
Arg
TCT
[ENA]
¡û
>C151023749
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
2417253
2417177
-
Arg
TCT
[Ensembl]
¡û
>C151039106
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
3467868
3467792
-
Arg
TCT
[Ensembl]
¡û
>W1511305058
JPLA01000022
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
112363
112439
+
Arg
TCT
[ENA]
¡û
>W1511305111
JPLB01000053
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 [JPLB]
87024
86948
-
Arg
TCT
[ENA]
¡û
>W1511305281
JPLD01000306
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
5487
5563
+
Arg
TCT
[ENA]
¡û
>W1511433912
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
2770973
2770897
-
Arg
TCT
[ENA]
¡û
>W1511547557
JZRB01000003
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
132073
131997
-
Arg
TCT
[ENA]
¡û
>W1511686271
LFQR01000030
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
84684
84760
+
Arg
TCT
[ENA]
¡û
>C161085655
CP015249
Gammaproteobacteria
Dokdonella koreensis DS-123 [CP015249]
2451695
2451619
-
Arg
TCT
[Ensembl]
¡û
>W121113877
ALOY01000118
Gammaproteobacteria
Dyella japonica A8 [ALOY]
12946
12870
-
Arg
TCT
[ENA]
¡û
>W1610616803
LGRQ01000789
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
406
330
-
Arg
TCT
[ENA]
¡û
>W1610742938
LMSL01000006
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
54248
54324
+
Arg
TCT
[ENA]
¡û
>W1710515255
FNBR01000001
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
513482
513558
+
Arg
TCT
[ENA]
¡û
>W1710519802
FNFA01000004
Gammaproteobacteria
Dyella jiangningensis [FNFA]
182985
183061
+
Arg
TCT
[ENA]
¡û
>W1710541149
FNYC01000003
Gammaproteobacteria
Frateuria terrea [FNYC]
143071
143147
+
Arg
TCT
[ENA]
¡û
>W1710545804
FOBU01000002
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
841247
841323
+
Arg
TCT
[ENA]
¡û
>W1710548709
FODZ01000003
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
376302
376226
-
Arg
TCT
[ENA]
¡û
>W1710555210
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
1678714
1678638
-
Arg
TCT
[ENA]
¡û
>W1710560307
FONH01000001
Gammaproteobacteria
Dyella marensis [FONH]
586458
586382
-
Arg
TCT
[ENA]
¡û
>W1710570524
FOVF01000001
Gammaproteobacteria
Dokdonella immobilis [FOVF]
123934
123858
-
Arg
TCT
[ENA]
¡û
>W1710573387
FOXL01000004
Gammaproteobacteria
Frateuria terrea [FOXL]
408349
408273
-
Arg
TCT
[ENA]
¡û
>W1710575664
FOZI01000003
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
108450
108526
+
Arg
TCT
[ENA]
¡û
>W1710579655
FPIS01000001
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
1147357
1147281
-
Arg
TCT
[ENA]
¡û
>W1710603049
FUYT01000005
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
228904
228828
-
Arg
TCT
[ENA]
¡û
>W1710742142
LGRQ01000789
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
406
330
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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