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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156078 (109 seq.)
>W1711107837
LTTE01000075
Bacteroidota
Prevotella sp. HMSC077E08 [LTTE]
11568
11491
-
Val
TAC
[ENA]
¡û
>W1711107851
LTTE01000158
Bacteroidota
Prevotella sp. HMSC077E08 [LTTE]
944
867
-
Val
TAC
[ENA]
¡û
>W1711110225
LTVI01000129
Bacteroidota
Prevotella sp. HMSC073D09 [LTVI]
2285
2208
-
Val
TAC
[ENA]
¡û
>W1711501507
MKRS01000149
Bacteroidota
Bacteroidales bacterium 45-6 [MKRS]
9149
9226
+
Val
TAC
[ENA]
¡û
>W1712038641
NFJB01000067
Bacteroidota
Parabacteroides sp. An277 [NFJB]
559
484
-
Val
TAC
[ENA]
¡û
>W1712038642
NFJB01000067
Bacteroidota
Parabacteroides sp. An277 [NFJB]
454
379
-
Val
TAC
[ENA]
¡û
>W1712038643
NFJB01000067
Bacteroidota
Parabacteroides sp. An277 [NFJB]
352
277
-
Val
TAC
[ENA]
¡û
>C171091953
CP019302
Bacteroidota
Prevotella intermedia strain 17 [CP019302, CP019303]
1138420
1138343
-
Val
TAC
-
¡û
>C171091956
CP019302
Bacteroidota
Prevotella intermedia strain 17 [CP019302, CP019303]
863296
863221
-
Val
TAC
-
¡û
>C171091957
CP019302
Bacteroidota
Prevotella intermedia strain 17 [CP019302, CP019303]
863173
863096
-
Val
TAC
-
¡û
>WENV180156086
OAUV01001448
[OAUV] human gut metagenome; faeces
193
118
-
Val
TAC
[ENA]
¢þ
>WENV180185040
OAWS01013787
[OAWS] human gut metagenome; faeces
747
672
-
Val
TAC
[ENA]
¢þ
>WENV180216843
OBAR01000166
[OBAR] human gut metagenome; human gut
76437
76361
-
Val
TAC
[ENA]
¢þ
>WENV180217271
OBAR01000940
[OBAR] human gut metagenome; human gut
944
1019
+
Val
TAC
[ENA]
¢þ
>WENV180217272
OBAR01000940
[OBAR] human gut metagenome; human gut
1061
1136
+
Val
TAC
[ENA]
¢þ
>WENV180318074
OBKL01052084
[OBKL] soil metagenome; Alaskan Permafrost
190
115
-
Val
TAC
[ENA]
¢þ
>WENV180322946
OBKR01009214
[OBKR] human gut metagenome; feces
497
574
+
Val
TAC
[ENA]
¢þ
>WENV180338518
OBLI01000487
[OBLI] pig gut metagenome; faeces
76
1
-
Val
TAC
[ENA]
¢þ
>WENV180529665
OCHK01000158
[OCHK] human gut metagenome; human gut
76398
76322
-
Val
TAC
[ENA]
¢þ
>WENV180530050
OCHK01000840
[OCHK] human gut metagenome; human gut
4
79
+
Val
TAC
[ENA]
¢þ
>WENV180531038
OCHK01019213
[OCHK] human gut metagenome; human gut
1886
1961
+
Val
TAC
[ENA]
¢þ
>WENV180558545
OCJY01130928
[OCJY] human gut metagenome; human gut
144
219
+
Val
TAC
[ENA]
¢þ
>WENV180616178
OCQA01000026
[OCQA] human gut metagenome; human gut
213767
213691
-
Val
TAC
[ENA]
¢þ
>WENV180616740
OCQA01000781
[OCQA] human gut metagenome; human gut
944
1019
+
Val
TAC
[ENA]
¢þ
>WENV180616741
OCQA01000781
[OCQA] human gut metagenome; human gut
1061
1136
+
Val
TAC
[ENA]
¢þ
>WENV180619741
OCQB01010409
[OCQB] human gut metagenome; human gut
2553
2630
+
Val
TAC
[ENA]
¢þ
>WENV180721662
ODGL01004997
[ODGL] human metagenome; G_DNA_Subgingival plaque
1157
1082
-
Val
TAC
[ENA]
¢þ
>WENV180726644
ODGU01000225
[ODGU] human metagenome; G_DNA_Supragingival plaque
42714
42639
-
Val
TAC
[ENA]
¢þ
>WENV180726830
ODGU01000663
[ODGU] human metagenome; G_DNA_Supragingival plaque
24229
24304
+
Val
TAC
[ENA]
¢þ
>WENV180734570
ODGZ01012924
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1717
1642
-
Val
TAC
[ENA]
¢þ
>WENV180796090
ODJB01001302
[ODJB] human metagenome; G_DNA_Supragingival plaque
11677
11752
+
Val
TAC
[ENA]
¢þ
>WENV180796483
ODJB01005367
[ODJB] human metagenome; G_DNA_Supragingival plaque
4789
4714
-
Val
TAC
[ENA]
¢þ
>WENV180808908
ODJK01001794
[ODJK] human metagenome; G_DNA_Subgingival plaque
8699
8624
-
Val
TAC
[ENA]
¢þ
>WENV180845449
ODKT01000440
[ODKT] human metagenome; G_DNA_Supragingival plaque
620
695
+
Val
TAC
[ENA]
¢þ
>WENV180845475
ODKT01000507
[ODKT] human metagenome; G_DNA_Supragingival plaque
14865
14790
-
Val
TAC
[ENA]
¢þ
>WENV180851218
ODKV01035947
[ODKV] human metagenome; G_DNA_Stool
488
413
-
Val
TAC
[ENA]
¢þ
>WENV180950555
ODUH01000127
[ODUH] human metagenome; G_DNA_Subgingival plaque
21287
21212
-
Val
TAC
[ENA]
¢þ
>WENV180950604
ODUH01000292
[ODUH] human metagenome; G_DNA_Subgingival plaque
18912
18837
-
Val
TAC
[ENA]
¢þ
>WENV180955829
ODUK01000133
[ODUK] human metagenome; G_DNA_Stool
24653
24578
-
Val
TAC
[ENA]
¢þ
>WENV180955830
ODUK01000133
[ODUK] human metagenome; G_DNA_Stool
24514
24439
-
Val
TAC
[ENA]
¢þ
>WENV180955831
ODUK01000133
[ODUK] human metagenome; G_DNA_Stool
24375
24300
-
Val
TAC
[ENA]
¢þ
>WENV181067865
ODZI01063853
[ODZI] human metagenome; G_DNA_Supragingival plaque
76
1
-
Val
TAC
[ENA]
¢þ
>WENV181079324
OEAS01004624
[OEAS] human metagenome; G_DNA_Supragingival plaque
509
584
+
Val
TAC
[ENA]
¢þ
>WENV181080350
OEAS01041660
[OEAS] human metagenome; G_DNA_Supragingival plaque
268
193
-
Val
TAC
[ENA]
¢þ
>WENV181080920
OEAS01098344
[OEAS] human metagenome; G_DNA_Supragingival plaque
831
756
-
Val
TAC
[ENA]
¢þ
>WENV181125806
OEFU01037515
[OEFU] human metagenome; G_DNA_Saliva
304
379
+
Val
TAC
[ENA]
¢þ
>WENV181133592
OEGF01000749
[OEGF] human metagenome; G_DNA_Stool
17712
17787
+
Val
TAC
[ENA]
¢þ
>WENV181133593
OEGF01000749
[OEGF] human metagenome; G_DNA_Stool
17851
17926
+
Val
TAC
[ENA]
¢þ
>WENV181133594
OEGF01000749
[OEGF] human metagenome; G_DNA_Stool
17990
18065
+
Val
TAC
[ENA]
¢þ
>W141135684
AWET01000004
Bacteroidota
Hoylesella pleuritidis F0068 [AWET]
58600
58525
-
Val
TAC
[ENA]
¡û
>W141135702
AWET01000034
Bacteroidota
Hoylesella pleuritidis F0068 [AWET]
850
927
+
Val
TAC
[ENA]
¡û
>WENV181705088
OGPK01002605
[OGPK] human gut metagenome; faeces
6347
6270
-
Val
TAC
[ENA]
¢þ
>WENV181913375
OGYE01006521
[OGYE] human gut metagenome; faeces
4599
4674
+
Val
TAC
[ENA]
¢þ
>WENV181974497
OHAB01043913
[OHAB] human gut metagenome; faeces
561
486
-
Val
TAC
[ENA]
¢þ
>W141225024
BAIX01000004
Bacteroidota
Hoylesella enoeca JCM 12259 [BAIX]
48709
48786
+
Val
TAC
[ENA]
¡û
>W141225025
BAIX01000004
Bacteroidota
Hoylesella enoeca JCM 12259 [BAIX]
49171
49248
+
Val
TAC
[ENA]
¡û
>WENV182276150
OHUO01003527
[OHUO] human gut metagenome; feces
51
126
+
Val
TAC
[ENA]
¢þ
>W141225782
BAJN01000004
Bacteroidota
Hoylesella pleuritidis JCM 14110 [BAJN]
102038
101963
-
Val
TAC
[ENA]
¡û
>W141225791
BAJN01000012
Bacteroidota
Hoylesella pleuritidis JCM 14110 [BAJN]
615
692
+
Val
TAC
[ENA]
¡û
>WENV182315415
OHYB01033908
[OHYB] human gut metagenome; feces
161
84
-
Val
TAC
[ENA]
¢þ
>WENV182317644
OHYE01033000
[OHYE] human gut metagenome; feces
912
837
-
Val
TAC
[ENA]
¢þ
>WENV182524195
OIWT01000071
[OIWT] human gut metagenome; faeces
83890
83965
+
Val
TAC
[ENA]
¢þ
>WENV182528193
OIWU01002036
[OIWU] human gut metagenome; faeces
17634
17709
+
Val
TAC
[ENA]
¢þ
>WENV182537078
OIXH01003213
[OIXH] human gut metagenome; faeces
228
305
+
Val
TAC
[ENA]
¢þ
>WENV182614930
OJKC01000721
[OJKC] metagenome; faeces
8492
8568
+
Val
TAC
[ENA]
¢þ
>WENV182654185
OJMI01001880
[OJMI] human gut metagenome; feces
1323
1246
-
Val
TAC
[ENA]
¢þ
>WENV182662333
OJMN01031026
[OJMN] human gut metagenome; feces
1148
1071
-
Val
TAC
[ENA]
¢þ
>WENV182667803
OJNI01013614
[OJNI] human gut metagenome; feces
1303
1226
-
Val
TAC
[ENA]
¢þ
>WENV182677204
OJNR01008326
[OJNR] human gut metagenome; human gut
196
121
-
Val
TAC
[ENA]
¢þ
>WENV182915268
OKTR01009190
[OKTR] human gut metagenome; feces
965
890
-
Val
TAC
[ENA]
¢þ
>WENV182969743
OKXB01072588
[OKXB] human gut metagenome; human gut
561
484
-
Val
TAC
[ENA]
¢þ
>WENV183038996
OLGB01002335
[OLGB] human gut metagenome; faeces
20585
20508
-
Val
TAC
[ENA]
¢þ
>WENV183040490
OLGD01000025
[OLGD] human gut metagenome; faeces
104353
104428
+
Val
TAC
[ENA]
¢þ
>WENV183040492
OLGD01000025
[OLGD] human gut metagenome; faeces
104630
104707
+
Val
TAC
[ENA]
¢þ
>WENV183073352
OLIT01042485
[OLIT] human gut metagenome; feces
228
305
+
Val
TAC
[ENA]
¢þ
>WENV183212532
OLQD01003718
[OLQD] human gut metagenome; faeces
9752
9677
-
Val
TAC
[ENA]
¢þ
>WENV183403597
OLZW01000509
[OLZW] human gut metagenome; feces
7734
7657
-
Val
TAC
[ENA]
¢þ
>WENV183406516
OMAA01021800
[OMAA] human gut metagenome; feces
118
43
-
Val
TAC
[ENA]
¢þ
>WENV183476149
OMEW01017922
[OMEW] human gut metagenome; feces
18
93
+
Val
TAC
[ENA]
¢þ
>WENV183506230
OMGY01000364
[OMGY] human gut metagenome; human gut
26986
26910
-
Val
TAC
[ENA]
¢þ
>WENV183638198
OQVH01013482
[OQVH] human gut metagenome; human gut
12
89
+
Val
TAC
[ENA]
¢þ
>WENV183774868
PPYF01061966
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1
76
+
Val
TAC
[ENA]
¢þ
>WENV183774869
PPYF01061966
[PPYF] human gut metagenome; stool from patient with Crohn's disease
108
184
+
Val
TAC
[ENA]
¢þ
>WENV170033462
CDYK01025648
[CDYK] gut metagenome; human stools
216598
216673
+
Val
TAC
[ENA]
¢þ
>WENV170033464
CDYK01025648
[CDYK] gut metagenome; human stools
216875
216950
+
Val
TAC
[ENA]
¢þ
>WENV170033764
CDYK01032615
[CDYK] gut metagenome; human stools
246
321
+
Val
TAC
[ENA]
¢þ
>WENV170033766
CDYK01032615
[CDYK] gut metagenome; human stools
523
600
+
Val
TAC
[ENA]
¢þ
>WENV170643189
JFJP01051351
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1801
1876
+
Val
TAC
[ENA]
¢þ
>WENV170643190
JFJP01051351
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1907
1984
+
Val
TAC
[ENA]
¢þ
>WENV170643428
JFJP01055941
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
125
48
-
Val
TAC
[ENA]
¢þ
>W1911534035
OLKN01000002
Bacteroidota
Bacteroides sp. Marseille-P3684 Marseille-P3684 Marseille-P4684 [OLKN]
6882
6957
+
Val
TAC
[ENA]
¡û
>W1911534036
OLKN01000002
Bacteroidota
Bacteroides sp. Marseille-P3684 Marseille-P3684 Marseille-P4684 [OLKN]
6999
7074
+
Val
TAC
[ENA]
¡û
>W1911534053
OLKN01000003
Bacteroidota
Bacteroides sp. Marseille-P3684 Marseille-P3684 Marseille-P4684 [OLKN]
691274
691198
-
Val
TAC
[ENA]
¡û
>C161052744
CP013195
Bacteroidota
Hoylesella enoeca F0113 [CP013195]
2276500
2276423
-
Val
TAC
[Ensembl]
¡û
>C161052745
CP013195
Bacteroidota
Hoylesella enoeca F0113 [CP013195]
2276038
2275961
-
Val
TAC
[Ensembl]
¡û
>W1610580592
LBCW01000028
Bacteroidota
Bacteroidales bacterium Barb6XT [LBCW]
2389
2314
-
Val
TAC
[ENA]
¡û
>W1610580651
LBCX01000188
Bacteroidota
Bacteroidales bacterium Barb4 [LBCX]
5023
4948
-
Val
TAC
[ENA]
¡û
>W1610580677
LBCY01000078
Bacteroidota
Bacteroidales bacterium Barb6 [LBCY]
4460
4385
-
Val
TAC
[ENA]
¡û
>W1610580707
LBCZ01000046
Bacteroidota
Bacteroidales bacterium Barb7 [LBCZ]
4467
4392
-
Val
TAC
[ENA]
¡û
>W1610890177
LRQG01000013
Bacteroidota
Prevotella corporis [LRQG]
32720
32643
-
Val
TAC
[ENA]
¡û
>W1610890211
LRQG01000222
Bacteroidota
Prevotella corporis [LRQG]
50683
50606
-
Val
TAC
[ENA]
¡û
>W1610890212
LRQG01000222
Bacteroidota
Prevotella corporis [LRQG]
50557
50482
-
Val
TAC
[ENA]
¡û
>W1710585022
FQWA01000026
Bacteroidota
Prevotella scopos JCM 17725 [FQWA]
43397
43320
-
Val
TAC
[ENA]
¡û
>W1710585023
FQWA01000026
Bacteroidota
Prevotella scopos JCM 17725 [FQWA]
43274
43197
-
Val
TAC
[ENA]
¡û
>W1710585028
FQWA01000028
Bacteroidota
Prevotella scopos JCM 17725 [FQWA]
12090
12167
+
Val
TAC
[ENA]
¡û
>W1710699604
LBCW01000028
Bacteroidota
Bacteroidales bacterium Barb6XT [LBCW]
2389
2314
-
Val
TAC
[ENA]
¡û
>W1710699663
LBCX01000188
Bacteroidota
Bacteroidales bacterium Barb4 [LBCX]
5023
4948
-
Val
TAC
[ENA]
¡û
>W1710699689
LBCY01000078
Bacteroidota
Bacteroidales bacterium Barb6 [LBCY]
4460
4385
-
Val
TAC
[ENA]
¡û
>W1710699719
LBCZ01000046
Bacteroidota
Bacteroidales bacterium Barb7 [LBCZ]
4467
4392
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK