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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156081 (59 seq.)
>W1710890675
LNBX01000048
Bacteroidota
Bacteroidetes bacterium OLB10 [LNBX]
52722
52797
+
Ile
GAT
[ENA]
¡û
>W1711338610
MBTF01000025
Bacteroidota
Mucilaginibacter pedocola [MBTF]
1699
1776
+
Ile
GAT
[ENA]
¡û
>C171057621
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
2011108
2011183
+
Ile
GAT
-
¡û
>C171057623
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
2017868
2017943
+
Ile
GAT
-
¡û
>C171057627
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
2531300
2531375
+
Ile
GAT
-
¡û
>C171057668
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
1131909
1131834
-
Ile
GAT
-
¡û
>WENV180032114
FTJU01161104
[FTJU] metagenome; soil
77
2
-
Ile
GAT
[ENA]
¢þ
>W141142870
AWRU01000031
Bacteroidota
Pedobacter sp. V48 [AWRU]
174450
174375
-
Ile
GAT
[ENA]
¡û
>WENV181854755
OGWK01016801
[OGWK] freshwater metagenome; freshwater
269
346
+
Ile
GAT
[ENA]
¢þ
>W141222927
BACV01000023
Bacteroidota
Cytophagales bacterium B6 B6 [BACV]
5850
5775
-
Ile
GAT
[ENA]
¡û
>WENV170649938
JRYD01000848
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
161
236
+
Ile
GAT
[ENA]
¢þ
>WENV170988043
MWVX01347732
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
206
131
-
Ile
GAT
[ENA]
¢þ
>WENV170988887
MWVY01024206
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
76
1
-
Ile
GAT
[ENA]
¢þ
>WENV170990613
MWWA01022628
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
592
517
-
Ile
GAT
[ENA]
¢þ
>WENV170990903
MWWA01068283
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
163
88
-
Ile
GAT
[ENA]
¢þ
>C181071976
CP022743
Bacteroidota
Mucilaginibacter xinganensis BJC16-A31 [CP022743]
939290
939365
+
Ile
GAT
-
¡û
>C181071998
CP022743
Bacteroidota
Mucilaginibacter xinganensis BJC16-A31 [CP022743]
4782261
4782186
-
Ile
GAT
-
¡û
>C181072002
CP022743
Bacteroidota
Mucilaginibacter xinganensis BJC16-A31 [CP022743]
4358666
4358591
-
Ile
GAT
-
¡û
>C181094333
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
47666
47741
+
Ile
GAT
-
¡û
>C181094340
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
1194648
1194723
+
Ile
GAT
-
¡û
>C181094342
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
1382861
1382936
+
Ile
GAT
-
¡û
>C181094372
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
3648994
3648919
-
Ile
GAT
-
¡û
>C181094374
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
3642704
3642629
-
Ile
GAT
-
¡û
>C191096537
CP032869
Bacteroidota
Mucilaginibacter celer HYN0043 [CP032869]
6108650
6108725
+
Ile
GAT
-
¡û
>C191096549
CP032869
Bacteroidota
Mucilaginibacter celer HYN0043 [CP032869]
5001793
5001718
-
Ile
GAT
-
¡û
>C191096551
CP032869
Bacteroidota
Mucilaginibacter celer HYN0043 [CP032869]
4770833
4770758
-
Ile
GAT
-
¡û
>W1911219819
NRSW01000002
Bacteroidota
Mucilaginibacter sp. MD40 [NRSW]
1385
1460
+
Ile
GAT
[ENA]
¡û
>W1911747214
QWDC01000014
Bacteroidota
Mucilaginibacter conchicola MYSH2 [QWDC]
501
426
-
Ile
GAT
[ENA]
¡û
>W1810090283
PGFJ01000001
Bacteroidota
Mucilaginibacter auburnensis DSM 28175 [PGFJ]
738490
738565
+
Ile
GAT
[ENA]
¡û
>W1810090291
PGFJ01000001
Bacteroidota
Mucilaginibacter auburnensis DSM 28175 [PGFJ]
1303757
1303832
+
Ile
GAT
[ENA]
¡û
>W1810477246
QAOQ01000016
Bacteroidota
Mucilaginibacter yixingensis DSM 26809 [QAOQ]
3631
3556
-
Ile
GAT
[ENA]
¡û
>W1810564227
QEAS01000049
Bacteroidota
Pararcticibacter amylolyticus FJ4-8 [QEAS]
3434
3359
-
Ile
GAT
[ENA]
¡û
>W1810584210
QEYR01000002
Bacteroidota
Mucilaginibacter rubeus P1 [QEYR]
89
14
-
Ile
GAT
[ENA]
¡û
>W1810587276
QFKU01000056
Bacteroidota
Mucilaginibacter kameinonensis P4 [QFKU]
23
98
+
Ile
GAT
[ENA]
¡û
>W1810587278
QFKU01000057
Bacteroidota
Mucilaginibacter kameinonensis P4 [QFKU]
160
235
+
Ile
GAT
[ENA]
¡û
>W1810587280
QFKU01000058
Bacteroidota
Mucilaginibacter kameinonensis P4 [QFKU]
477
402
-
Ile
GAT
[ENA]
¡û
>W1810587312
QFKV01000037
Bacteroidota
Mucilaginibacter rubeus P3 [QFKV]
2155
2230
+
Ile
GAT
[ENA]
¡û
>W1810587370
QFKW01000102
Bacteroidota
Mucilaginibacter rubeus P2 [QFKW]
89
14
-
Ile
GAT
[ENA]
¡û
>W1810594634
QGDC01000014
Bacteroidota
Mucilaginibacter hurinus ZR32 [QGDC]
3619
3544
-
Ile
GAT
[ENA]
¡û
>W1810597126
QGHA01000030
Bacteroidota
Mucilaginibacter oryzae DSM 19975 [QGHA]
1810
1885
+
Ile
GAT
[ENA]
¡û
>W1810676175
QKLU01000016
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
467
392
-
Ile
GAT
[ENA]
¡û
>W1810676225
QKLV01000034
Bacteroidota
Mucilaginibacter sp. OV119 [QKLV]
2123
2198
+
Ile
GAT
[ENA]
¡û
>W1810917807
QWDE01000009
Bacteroidota
Mucilaginibacter terrenus ZH6 [QWDE]
3302
3227
-
Ile
GAT
[ENA]
¡û
>C161077156
CP014773
Bacteroidota
Mucilaginibacter sp. PAMC 26640 [CP014773]
2626986
2627063
+
Ile
GAT
[Ensembl]
¡û
>C161077181
CP014773
Bacteroidota
Mucilaginibacter sp. PAMC 26640 [CP014773]
945408
945331
-
Ile
GAT
[Ensembl]
¡û
>C161077184
CP014773
Bacteroidota
Mucilaginibacter sp. PAMC 26640 [CP014773]
477076
476999
-
Ile
GAT
[Ensembl]
¡û
>W1610612097
LGEK01000159
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
1865
1942
+
Ile
GAT
[ENA]
¡û
>W1610751112
LNBX01000048
Bacteroidota
Bacteroidetes bacterium OLB10 [LNBX]
52722
52797
+
Ile
GAT
[ENA]
¡û
>W1710505668
FMTV01000021
Bacteroidota
Mucilaginibacter sp. NFR10 [FMTV]
2153
2230
+
Ile
GAT
[ENA]
¡û
>W1710513687
FNAI01000037
Bacteroidota
Mucilaginibacter pineti [FNAI]
3826
3749
-
Ile
GAT
[ENA]
¡û
>W1710516034
FNCG01000040
Bacteroidota
Mucilaginibacter gossypii [FNCG]
2212
2289
+
Ile
GAT
[ENA]
¡û
>W1710525892
FNJV01000018
Bacteroidota
Mucilaginibacter sp. OK268 [FNJV]
2258
2335
+
Ile
GAT
[ENA]
¡û
>W1710548343
FODR01000027
Bacteroidota
Mucilaginibacter sp. OK283 [FODR]
2095
2172
+
Ile
GAT
[ENA]
¡û
>W1710592464
FRCM01000005
Bacteroidota
Mucilaginibacter sp. OK098 [FRCM]
2437
2512
+
Ile
GAT
[ENA]
¡û
>W1710592477
FRCM01000006
Bacteroidota
Mucilaginibacter sp. OK098 [FRCM]
3867
3792
-
Ile
GAT
[ENA]
¡û
>W1710592485
FRCM01000012
Bacteroidota
Mucilaginibacter sp. OK098 [FRCM]
110326
110401
+
Ile
GAT
[ENA]
¡û
>W1710592487
FRCM01000014
Bacteroidota
Mucilaginibacter sp. OK098 [FRCM]
82847
82772
-
Ile
GAT
[ENA]
¡û
>W1710595966
FTMG01000033
Bacteroidota
Mucilaginibacter lappiensis [FTMG]
2098
2175
+
Ile
GAT
[ENA]
¡û
>W1710733603
LGEK01000159
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
1865
1942
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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