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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156124 (57 seq.)
>W1710872949
LMMK01000007
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
169111
169188
+
Pro
GGG
[ENA]
¡û
>W1710872996
LMML01000010
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
41134
41211
+
Pro
GGG
[ENA]
¡û
>W1710873691
LMMZ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
502304
502381
+
Pro
GGG
[ENA]
¡û
>W1710874643
LMNU01000006
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
54724
54801
+
Pro
GGG
[ENA]
¡û
>W1710877810
LMQK01000031
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
81423
81346
-
Pro
GGG
[ENA]
¡û
>W1710878517
LMRA01000004
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
40287
40364
+
Pro
GGG
[ENA]
¡û
>W1710878629
LMRC01000031
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
449652
449729
+
Pro
GGG
[ENA]
¡û
>W1710879210
LMRM01000056
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
124538
124615
+
Pro
GGG
[ENA]
¡û
>W1710995042
LPZR01000164
Alphaproteobacteria
Tistrella mobilis [LPZR]
101645
101568
-
Pro
GGG
[ENA]
¡û
>W1711505925
MKVY01000038
Alphaproteobacteria
Rhizobiales bacterium 65-9 [MKVY]
561713
561790
+
Pro
GGG
[ENA]
¡û
>W1711793120
MWLJ01000008
Alphaproteobacteria
Rhodomicrobium vannielii [MWLJ]
50774
50697
-
Pro
GGG
[ENA]
¡û
>W1711793183
MWLK01000022
Alphaproteobacteria
Rhodomicrobium sp. R_RK_3 vannielii [MWLK]
168670
168593
-
Pro
GGG
[ENA]
¡û
>W131186628
ARWG01000001
Alphaproteobacteria
Hyphomicrobium sp. 99 [ARWG]
971132
971055
-
Pro
GGG
[ENA]
¡û
>C010849
CP000158
Alphaproteobacteria
Hyphomonas neptunium ATCC 15444 [CP000158]
1176506
1176429
-
Pro
GGG
[Ensembl]
¡û
>W141007482
AGWY01000006
Alphaproteobacteria
Afipia clevelandensis ATCC 49720 [AGWY]
111252
111329
+
Pro
GGG
[ENA]
¡û
>WENV180103391
OAPA01027856
[OAPA] marine metagenome; ENVO:00002010
432
355
-
Pro
GGG
[ENA]
¢þ
>WENV180296410
OBJA01000473
[OBJA] soil metagenome; sediment, water from around vicinity
27736
27659
-
Pro
GGG
[ENA]
¢þ
>WENV180396571
OBPV01021440
[OBPV] marine metagenome; ENVO:00002010
554
477
-
Pro
GGG
[ENA]
¢þ
>W141063396
APHQ01000009
Alphaproteobacteria
Afipia sp. OHSU_II-uncloned [APHQ]
405221
405298
+
Pro
GGG
[ENA]
¡û
>W141063702
APJE01000006
Alphaproteobacteria
Afipia sp. OHSU_I-C6 [APJE]
76117
76040
-
Pro
GGG
[ENA]
¡û
>W141063759
APJF01000008
Alphaproteobacteria
Afipia sp. OHSU_I-C4 [APJF]
53693
53770
+
Pro
GGG
[ENA]
¡û
>W141066803
ARYI01000002
Alphaproteobacteria
Hyphomonas hirschiana VP5 [ARYI]
241551
241628
+
Pro
GGG
[ENA]
¡û
>W141066964
ARYM01000003
Alphaproteobacteria
Hyphomonas polymorpha PS728 [ARYM]
85475
85398
-
Pro
GGG
[ENA]
¡û
>W141093618
AVBK01000027
Alphaproteobacteria
Afipia sp. NBIMC_P1-C1 [AVBK]
26445
26368
-
Pro
GGG
[ENA]
¡û
>W141093670
AVBL01000034
Alphaproteobacteria
Afipia sp. NBIMC_P1-C2 [AVBL]
26443
26366
-
Pro
GGG
[ENA]
¡û
>WENV181167171
OEIU01012186
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1715
1638
-
Pro
GGG
[ENA]
¢þ
>W141278839
JAFV01000001
Alphaproteobacteria
Methylopila sp. 73B [JAFV]
1019621
1019544
-
Pro
GGG
[ENA]
¡û
>WENV183725744
PJQF01011938
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
94
171
+
Pro
GGG
[ENA]
¢þ
>WENV170176263
CEOS01055963
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
626
549
-
Pro
GGG
[ENA]
¢þ
>WENV170706606
LNAP01004590
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1409
1332
-
Pro
GGG
[ENA]
¢þ
>WENV170934390
MDTG01237678
[MDTG] marine metagenome; seawater
21125
21202
+
Pro
GGG
[ENA]
¢þ
>WENV170974844
MTKY01077174
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2557
2480
-
Pro
GGG
[ENA]
¢þ
>C181180016
CP029550
Alphaproteobacteria
Methylobacterium durans 17SD2-17 [CP029550]
873246
873169
-
Pro
GGG
-
¡û
>C181180030
CP029551
Alphaproteobacteria
Methylobacterium radiodurans 17Sr1-43 [CP029551]
1915498
1915575
+
Pro
GGG
-
¡û
>C181180209
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
5575967
5576044
+
Pro
GGG
-
¡û
>W1910006622
BAUX01000006
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
178500
178423
-
Pro
GGG
[ENA]
¡û
>W1810057215
PDHT01000027
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
2392
2315
-
Pro
GGG
[ENA]
¡û
>W1810079896
PELK01001541
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
6577
6654
+
Pro
GGG
[ENA]
¡û
>W1810672720
QJTP01000015
Alphaproteobacteria
Methylobacterium sp. GV094 [QJTP]
41498
41575
+
Pro
GGG
[ENA]
¡û
>W1511400936
JTHG01000066
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
688
765
+
Pro
GGG
[ENA]
¡û
>W1511591977
LBIA01000001
Alphaproteobacteria
Afipia massiliensis LC387 [LBIA]
541872
541949
+
Pro
GGG
[ENA]
¡û
>C121009470
CP003236
Alphaproteobacteria
Tistrella mobilis KA081020-065 [CP003236]
1998066
1997989
-
Pro
GGG
[Ensembl]
¡û
>C161001193
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
1036100
1036023
-
Pro
GGG
[Ensembl]
¡û
>W1610735295
LMMK01000007
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
169111
169188
+
Pro
GGG
[ENA]
¡û
>W1610735342
LMML01000010
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
41134
41211
+
Pro
GGG
[ENA]
¡û
>W1610736037
LMMZ01000023
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
502304
502381
+
Pro
GGG
[ENA]
¡û
>W1610736989
LMNU01000006
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
54724
54801
+
Pro
GGG
[ENA]
¡û
>W1610740156
LMQK01000031
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
81423
81346
-
Pro
GGG
[ENA]
¡û
>W1610740975
LMRC01000031
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
449652
449729
+
Pro
GGG
[ENA]
¡û
>W1610741556
LMRM01000056
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
124538
124615
+
Pro
GGG
[ENA]
¡û
>W1610849699
LPZR01000164
Alphaproteobacteria
Tistrella mobilis [LPZR]
101645
101568
-
Pro
GGG
[ENA]
¡û
>W1710527753
FNLG01000001
Alphaproteobacteria
Rhizobiales bacterium GAS113 [FNLG]
4815950
4816027
+
Pro
GGG
[ENA]
¡û
>W1710535699
FNSS01000001
Alphaproteobacteria
Rhizobiales bacterium GAS188 [FNSS]
6278874
6278797
-
Pro
GGG
[ENA]
¡û
>W1710535983
FNSX01000001
Alphaproteobacteria
Rhizobiales bacterium GAS191 [FNSX]
5600643
5600720
+
Pro
GGG
[ENA]
¡û
>W1710548838
FOEB01000016
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
1871
1948
+
Pro
GGG
[ENA]
¡û
>W1710560694
FONO01000033
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
35315
35392
+
Pro
GGG
[ENA]
¡û
>W1710579033
FPCB01000005
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
71346
71269
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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