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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156149 (54 seq.)
>A171000033
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
983966
983892
-
Glu
CTC
-
¡û
>A171000778
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
2455428
2455502
+
Glu
CTC
-
¡û
>A171001572
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
1435704
1435779
+
Glu
CTC
-
¡û
>A171002723
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1770384
1770309
-
Glu
CTC
-
¡û
>A171004191
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
1678872
1678797
-
Glu
CTC
-
¡û
>A171007287
HF582854
Euryarchaeota
Natronomonas moolapensis 8.8.11 [HF582854]
1545862
1545788
-
Glu
CTC
-
¡û
>A171007439
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
1264089
1264164
+
Glu
CTC
-
¡û
>WENV180318595
OBKM01002608
[OBKM] metagenome; water
4519
4594
+
Glu
CTC
[ENA]
¢þ
>At0826
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
990847
990773
-
Glu
CTC
[Ensembl]
¡û
>At1714
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
700944
700870
-
Glu
CTC
[Ensembl]
¡û
>WENV170660873
JXWU01051527
[JXWU] soil metagenome; rice field; organic control Plot
137
63
-
Glu
CTC
[ENA]
¢þ
>WENV170682327
LFFM01009291
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4888
4962
+
Glu
CTC
[ENA]
¢þ
>WENV170702184
LKMJ01000786
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5742
5668
-
Glu
CTC
[ENA]
¢þ
>W1910006696
BBJO01000006
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
47585
47660
+
Glu
CTC
[ENA]
¡û
>W1910227058
FNIA01000012
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
2383
2308
-
Glu
CTC
[ENA]
¡û
>W1910227086
FNKQ01000001
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
1104337
1104411
+
Glu
CTC
[ENA]
¡û
>W1910228439
FNPB01000008
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
114962
115037
+
Glu
CTC
[ENA]
¡û
>W1910228606
FNVN01000002
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
568322
568397
+
Glu
CTC
[ENA]
¡û
>W1910230044
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
158258
158184
-
Glu
CTC
[ENA]
¡û
>W1910230380
FOOQ01000012
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
12256
12331
+
Glu
CTC
[ENA]
¡û
>W1910230818
FOZK01000003
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
422364
422289
-
Glu
CTC
[ENA]
¡û
>W1910282442
FRAN01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [FRAN]
736099
736173
+
Glu
CTC
[ENA]
¡û
>W1910340472
FTNO01000001
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
851509
851434
-
Glu
CTC
[ENA]
¡û
>W1910568550
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
1015667
1015742
+
Glu
CTC
[ENA]
¡û
>W1910696296
MEIH01000318
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
11456
11530
+
Glu
CTC
[ENA]
¡û
>W1911493130
OBEJ01000001
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
177713
177787
+
Glu
CTC
[ENA]
¡û
>W1911693729
QLVG01000008
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
76401
76476
+
Glu
CTC
[ENA]
¡û
>W1911696834
QNGA01000004
Euryarchaeota
halophilic archaeon H22 [QNGA]
156790
156716
-
Glu
CTC
[ENA]
¡û
>W1911709629
QPLR01000001
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
193887
193812
-
Glu
CTC
[ENA]
¡û
>W1911709864
QPMJ01000001
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
1035219
1035294
+
Glu
CTC
[ENA]
¡û
>W1911709960
QPND01000001
Euryarchaeota
Saliphagus sp. LR7 [QPND]
339410
339335
-
Glu
CTC
[ENA]
¡û
>W1911717790
QQRR01000002
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
1077846
1077921
+
Glu
CTC
[ENA]
¡û
>W1911717803
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
13913
13987
+
Glu
CTC
[ENA]
¡û
>W1911749390
QWGG01000001
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
1077363
1077437
+
Glu
CTC
[ENA]
¡û
>W1911769958
QXIJ01000001
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
363260
363335
+
Glu
CTC
[ENA]
¡û
>W1610000816
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
1270395
1270321
-
Glu
CTC
[ENA]
¡û
>W1610002970
AEMG01000006
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
107961
107887
-
Glu
CTC
[ENA]
¡û
>W1610004171
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
1679608
1679683
+
Glu
CTC
[ENA]
¡û
>W1610011873
AOHV01000038
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
176665
176590
-
Glu
CTC
[ENA]
¡û
>W1610012661
AOIQ01000024
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
38053
38128
+
Glu
CTC
[ENA]
¡û
>W1610012822
AOIU01000031
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
22233
22307
+
Glu
CTC
[ENA]
¡û
>W1610018871
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
106799
106725
-
Glu
CTC
[ENA]
¡û
>W1610018990
AQZY01000011
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
4089
4014
-
Glu
CTC
[ENA]
¡û
>W1610029928
AXZD01000008
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
15385
15460
+
Glu
CTC
[ENA]
¡û
>W1610061859
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
1212088
1212162
+
Glu
CTC
[ENA]
¡û
>W1610085057
CEML01000001
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
22984
23059
+
Glu
CTC
[ENA]
¡û
>W1610085122
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
1436652
1436577
-
Glu
CTC
[ENA]
¡û
>W1610085161
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
1479653
1479578
-
Glu
CTC
[ENA]
¡û
>W1610085200
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
1478492
1478417
-
Glu
CTC
[ENA]
¡û
>W1610085223
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
1080408
1080483
+
Glu
CTC
[ENA]
¡û
>W1610085256
CEMR01000001
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
23041
23116
+
Glu
CTC
[ENA]
¡û
>W1610085305
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
1036882
1036957
+
Glu
CTC
[ENA]
¡û
>W1610799818
LOPU01000031
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
107987
108061
+
Glu
CTC
[ENA]
¡û
>W1610986949
LWHG01000021
Euryarchaeota
Haladaptatus sp. R4 [LWHG]
423669
423595
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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