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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156150 (59 seq.)
>A171001192
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
1415310
1415236
-
Arg
TCG
-
¡û
>A171001579
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
2074106
2074180
+
Arg
TCG
-
¡û
>A171002455
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
2231788
2231862
+
Arg
TCG
-
¡û
>A171006226
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
1317410
1317336
-
Arg
TCG
-
¡û
>A171006931
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
3587597
3587523
-
Arg
TCG
-
¡û
>WENV170679977
LFCJ01002102
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
14217
14143
-
Arg
TCG
[ENA]
¢þ
>WENV170680186
LFCJ01005511
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
9191
9117
-
Arg
TCG
[ENA]
¢þ
>WENV170680414
LFCJ01010797
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
6199
6277
+
Arg
TCG
[ENA]
¢þ
>WENV170680465
LFCJ01011877
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
51
125
+
Arg
TCG
[ENA]
¢þ
>WENV170680528
LFCJ01013609
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
52
126
+
Arg
TCG
[ENA]
¢þ
>WENV170680544
LFCJ01014471
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
40
114
+
Arg
TCG
[ENA]
¢þ
>WENV170682053
LFFM01005531
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
189
115
-
Arg
TCG
[ENA]
¢þ
>WENV170683244
LFIK01007581
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
39
116
+
Arg
TCG
[ENA]
¢þ
>WENV170703646
LKMJ01014947
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
76
2
-
Arg
TCG
[ENA]
¢þ
>W1910186256
CCDK010000005
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
879591
879517
-
Arg
TCG
[ENA]
¡û
>W1910193538
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
706105
706179
+
Arg
TCG
[ENA]
¡û
>W1910227028
FNHL01000003
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
85244
85170
-
Arg
TCG
[ENA]
¡û
>W1910227098
FNKQ01000002
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
316876
316950
+
Arg
TCG
[ENA]
¡û
>W1910229606
FOAD01000001
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
1072347
1072272
-
Arg
TCG
[ENA]
¡û
>W1910230246
FOKW01000004
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
31525
31451
-
Arg
TCG
[ENA]
¡û
>W1910230490
FOTC01000002
Euryarchaeota
Halogranum rubrum CGMCC 1.7738 [FOTC]
982580
982506
-
Arg
TCG
[ENA]
¡û
>W1910281632
FQWV01000005
Euryarchaeota
Halobaculum gomorrense DSM 9297 [FQWV]
127971
127897
-
Arg
TCG
[ENA]
¡û
>W1910282446
FRAN01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [FRAN]
523259
523185
-
Arg
TCG
[ENA]
¡û
>W1910573476
JPES01000030
Euryarchaeota
Haloferax sp. ATB1 [JPES]
9156
9230
+
Arg
TCG
[ENA]
¡û
>W1910696274
MEIH01000082
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
8347
8273
-
Arg
TCG
[ENA]
¡û
>W1911629873
PSYU01000002
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
301856
301930
+
Arg
TCG
[ENA]
¡û
>W1911629910
PSYV01000001
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
1072590
1072516
-
Arg
TCG
[ENA]
¡û
>W1911629949
PSYW01000001
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
52056
52130
+
Arg
TCG
[ENA]
¡û
>W1911630010
PSYX01000001
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
1072590
1072516
-
Arg
TCG
[ENA]
¡û
>W1911630062
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
1454098
1454024
-
Arg
TCG
[ENA]
¡û
>W1911655719
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
302659
302733
+
Arg
TCG
[ENA]
¡û
>W1911655720
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
309965
310039
+
Arg
TCG
[ENA]
¡û
>W1911717762
QQRR01000001
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
337893
337967
+
Arg
TCG
[ENA]
¡û
>W1911717807
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
361100
361174
+
Arg
TCG
[ENA]
¡û
>W1610002965
AEMG01000006
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
320801
320875
+
Arg
TCG
[ENA]
¡û
>W1610004060
AGFZ01000074
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
16096
16022
-
Arg
TCG
[ENA]
¡û
>W1610005867
ALJD01000002
Euryarchaeota
Halogranum salarium B-1 [ALJD]
383664
383738
+
Arg
TCG
[ENA]
¡û
>W1610011525
ANPG01000475
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
2428
2354
-
Arg
TCG
[ENA]
¡û
>W1610011861
AOHV01000029
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
5162
5088
-
Arg
TCG
[ENA]
¡û
>W1610012882
AOIV01000044
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
97436
97510
+
Arg
TCG
[ENA]
¡û
>W1610013313
AOJL01000037
Euryarchaeota
Halorubrum coriense DSM 10284 [AOJL]
68657
68732
+
Arg
TCG
[ENA]
¡û
>W1610013623
AOLG01000013
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
2068
1994
-
Arg
TCG
[ENA]
¡û
>W1610013705
AOLI01000009
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
206229
206155
-
Arg
TCG
[ENA]
¡û
>W1610013796
AOLJ01000022
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
269908
269982
+
Arg
TCG
[ENA]
¡û
>W1610013823
AOLK01000015
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
547076
547002
-
Arg
TCG
[ENA]
¡û
>W1610013857
AOLL01000008
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
268669
268743
+
Arg
TCG
[ENA]
¡û
>W1610013917
AOLM01000004
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
163960
164034
+
Arg
TCG
[ENA]
¡û
>W1610013958
AOLN01000001
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
315292
315366
+
Arg
TCG
[ENA]
¡û
>W1610014009
AOLO01000003
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
35547
35621
+
Arg
TCG
[ENA]
¡û
>W1610014085
AOLP01000014
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
47347
47273
-
Arg
TCG
[ENA]
¡û
>W1610014431
AOLZ01000044
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
17953
17879
-
Arg
TCG
[ENA]
¡û
>W1610018829
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
319642
319716
+
Arg
TCG
[ENA]
¡û
>W1610029940
AXZD01000009
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
64835
64909
+
Arg
TCG
[ENA]
¡û
>W1610784297
LOEP01000018
Euryarchaeota
Haloferax sp. Q22 [LOEP]
6531
6605
+
Arg
TCG
[ENA]
¡û
>W1610799794
LOPU01000018
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
761207
761133
-
Arg
TCG
[ENA]
¡û
>W1610799865
LOPV01000716
Euryarchaeota
Haloferax profundi SB29 [LOPV]
2188
2114
-
Arg
TCG
[ENA]
¡û
>W1610799886
LOPW01000031
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
134117
134043
-
Arg
TCG
[ENA]
¡û
>W1610925054
LTAZ01000005
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
383258
383184
-
Arg
TCG
[ENA]
¡û
>W1610986951
LWHG01000021
Euryarchaeota
Haladaptatus sp. R4 [LWHG]
79328
79251
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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