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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156153 (111 seq.)
>A171001591
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
2230155
2230079
-
Met
CAT
-
¡û
>A171002459
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
3282186
3282262
+
Met
CAT
-
¡û
>A171002612
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
696135
696211
+
Met
CAT
-
¡û
>A171002700
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1102349
1102424
+
Met
CAT
-
¡û
>A171003054
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
2928680
2928756
+
Met
CAT
-
¡û
>A171003945
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
708536
708612
+
Met
CAT
-
¡û
>A171005802
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
2299978
2300054
+
Met
CAT
-
¡û
>A171006898
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
615885
615810
-
Met
CAT
-
¡û
>A171006927
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
4022273
4022348
+
Met
CAT
-
¡û
>A171006993
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
711867
711943
+
Met
CAT
-
¡û
>WENV180318331
OBKM01000421
[OBKM] metagenome; water
13866
13941
+
fMet
CAT
[ENA]
¢þ
>WENV170679594
LFCJ01000061
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
44926
44851
-
Met
CAT
[ENA]
¢þ
>WENV170679735
LFCJ01000227
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
32639
32715
+
Met
CAT
[ENA]
¢þ
>WENV170679881
LFCJ01001218
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
908
833
-
Met
CAT
[ENA]
¢þ
>WENV170679907
LFCJ01001364
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
9058
9134
+
Met
CAT
[ENA]
¢þ
>WENV170679917
LFCJ01001538
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
15177
15252
+
Met
CAT
[ENA]
¢þ
>WENV170679945
LFCJ01001832
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
450
375
-
Met
CAT
[ENA]
¢þ
>WENV170680291
LFCJ01007239
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
7922
7998
+
Met
CAT
[ENA]
¢þ
>WENV170681219
LFFM01000212
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
21708
21783
+
Met
CAT
[ENA]
¢þ
>WENV170681418
LFFM01000754
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
19588
19663
+
Met
CAT
[ENA]
¢þ
>WENV170681504
LFFM01001128
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
10269
10195
-
Met
CAT
[ENA]
¢þ
>WENV170681596
LFFM01001591
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
7315
7391
+
Met
CAT
[ENA]
¢þ
>WENV170681614
LFFM01001677
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
8100
8024
-
Met
CAT
[ENA]
¢þ
>WENV170681648
LFFM01001848
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
3499
3574
+
Met
CAT
[ENA]
¢þ
>WENV170681836
LFFM01003349
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
9220
9144
-
Met
CAT
[ENA]
¢þ
>WENV170701972
LKMJ01000189
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
8150
8074
-
Met
CAT
[ENA]
¢þ
>WENV170702065
LKMJ01000433
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
17504
17429
-
Met
CAT
[ENA]
¢þ
>WENV170702648
LKMJ01003231
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4823
4899
+
Met
CAT
[ENA]
¢þ
>WENV170703354
LKMJ01010032
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4321
4396
+
Met
CAT
[ENA]
¢þ
>WENV170703453
LKMJ01011884
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4162
4237
+
Met
CAT
[ENA]
¢þ
>WENV170703558
LKMJ01013550
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
431
506
+
Met
CAT
[ENA]
¢þ
>At0769
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
3104223
3104297
+
Met
CAT
[Ensembl]
¡û
>W1910175094
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
901292
901215
-
Met
CAT
[ENA]
¡û
>W1910226706
FMZP01000013
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
35916
35991
+
Met
CAT
[ENA]
¡û
>W1910226716
FNBK01000001
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
175568
175493
-
Met
CAT
[ENA]
¡û
>W1910226738
FNBK01000010
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
82567
82643
+
Met
CAT
[ENA]
¡û
>W1910227036
FNIA01000002
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
102987
102911
-
Met
CAT
[ENA]
¡û
>W1910227132
FNLC01000001
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
584067
583992
-
Met
CAT
[ENA]
¡û
>W1910228348
FNOF01000001
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
461023
461100
+
Met
CAT
[ENA]
¡û
>W1910229695
FOCX01000006
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
19336
19412
+
Met
CAT
[ENA]
¡û
>W1910229704
FOCX01000013
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
13046
13121
+
Met
CAT
[ENA]
¡û
>W1910229803
FOFD01000002
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
880430
880355
-
Met
CAT
[ENA]
¡û
>W1910229824
FOFD01000007
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
39517
39441
-
Met
CAT
[ENA]
¡û
>W1910229941
FOIS01000002
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
694577
694502
-
Met
CAT
[ENA]
¡û
>W1910230233
FOKW01000001
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
770983
770908
-
Met
CAT
[ENA]
¡û
>W1910282440
FRAN01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [FRAN]
583328
583404
+
Met
CAT
[ENA]
¡û
>W1910340454
FTNO01000001
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
1081604
1081679
+
Met
CAT
[ENA]
¡û
>W1910340546
FTNR01000006
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
60939
61015
+
Met
CAT
[ENA]
¡û
>W1910340565
FTNR01000026
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
9867
9791
-
Met
CAT
[ENA]
¡û
>W1910568493
JDTG01000005
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
297732
297808
+
Met
CAT
[ENA]
¡û
>W1910569074
JHUT02000005
Euryarchaeota
Natrinema mahii H13 [JHUT]
177832
177756
-
Met
CAT
[ENA]
¡û
>W1910572710
JNCS01000003
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
407363
407288
-
Met
CAT
[ENA]
¡û
>W1910575869
JROF01000003
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
94375
94450
+
Met
CAT
[ENA]
¡û
>W1910617585
LIUF01000001
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
112220
112144
-
Met
CAT
[ENA]
¡û
>W1910646119
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
2400781
2400856
+
Met
CAT
[ENA]
¡û
>W1910696278
MEIH01000132
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
15118
15194
+
Met
CAT
[ENA]
¡û
>W1910826104
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
648821
648745
-
Met
CAT
[ENA]
¡û
>W1911696831
QNGA01000004
Euryarchaeota
halophilic archaeon H22 [QNGA]
259159
259234
+
Met
CAT
[ENA]
¡û
>W1911709462
QPLN01000002
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
450710
450787
+
Met
CAT
[ENA]
¡û
>W1911709604
QPLQ01000002
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
433498
433421
-
Met
CAT
[ENA]
¡û
>W1911709863
QPMJ01000001
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
858219
858294
+
Met
CAT
[ENA]
¡û
>W1911717986
QQTY01000002
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
299911
299987
+
Met
CAT
[ENA]
¡û
>W1911749410
QWGG01000004
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
42637
42713
+
Met
CAT
[ENA]
¡û
>W1911770006
QXIK01000001
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
418129
418052
-
Met
CAT
[ENA]
¡û
>W1911824361
QZWE01000028
Euryarchaeota
Halococcus sp. IIIV-5B [QZWE]
11441
11516
+
Met
CAT
[ENA]
¡û
>W1610000500
ABEB01000002
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [ABEB]
198876
198951
+
Met
CAT
[ENA]
¡û
>W1610002968
AEMG01000006
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
260732
260656
-
Pseudo
CAT
[ENA]
¡û
>W1610004062
AGFZ01000088
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
44211
44286
+
Pseudo
CAT
[ENA]
¡û
>W1610004121
AGIN01000002
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
224151
224227
+
Pseudo
CAT
[ENA]
¡û
>W1610005346
AJRK01000423
Euryarchaeota
Halococcus hamelinensis 100A6 [AJRK]
14439
14361
-
Pseudo
CAT
[ENA]
¡û
>W1610011854
AOHV01000027
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
198106
198182
+
Pseudo
CAT
[ENA]
¡û
>W1610011960
AOHX01000039
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
153761
153836
+
Pseudo
CAT
[ENA]
¡û
>W1610012025
AOHZ01000023
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
27798
27723
-
Pseudo
CAT
[ENA]
¡û
>W1610012247
AOIE01000062
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
75414
75490
+
Pseudo
CAT
[ENA]
¡û
>W1610012382
AOIK01000025
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
250485
250560
+
Pseudo
CAT
[ENA]
¡û
>W1610012628
AOIQ01000006
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
450237
450163
-
Pseudo
CAT
[ENA]
¡û
>W1610012676
AOIR01000049
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
24459
24383
-
Pseudo
CAT
[ENA]
¡û
>W1610012763
AOIT01000016
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
130745
130820
+
Pseudo
CAT
[ENA]
¡û
>W1610012815
AOIU01000024
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
1249
1173
-
Pseudo
CAT
[ENA]
¡û
>W1610012878
AOIV01000041
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
162327
162401
+
Met
CAT
[ENA]
¡û
>W1610013445
AOJO01000058
Euryarchaeota
Halorubrum hochstenium ATCC 700873 [AOJO]
48554
48631
+
Met
CAT
[ENA]
¡û
>W1610014157
AOLQ01000069
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
460929
461007
+
Pseudo
CAT
[ENA]
¡û
>W1610014197
AOLR01000021
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
159728
159650
-
Pseudo
CAT
[ENA]
¡û
>W1610014211
AOLS01000032
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
7959
8037
+
Pseudo
CAT
[ENA]
¡û
>W1610014279
AOLW01000020
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
22720
22644
-
Pseudo
CAT
[ENA]
¡û
>W1610014322
AOLX01000017
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
12599
12521
-
Pseudo
CAT
[ENA]
¡û
>W1610014397
AOLY01000038
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
22571
22493
-
Pseudo
CAT
[ENA]
¡û
>W1610014408
AOLZ01000022
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
121889
121814
-
Pseudo
CAT
[ENA]
¡û
>W1610014467
AOMA01000082
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
5720
5645
-
Pseudo
CAT
[ENA]
¡û
>W1610014517
AOMB01000041
Euryarchaeota
Halococcus hamelinensis 100A6 [AOMB]
174859
174937
+
Pseudo
CAT
[ENA]
¡û
>W1610014584
AOMD01000018
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
203100
203022
-
Pseudo
CAT
[ENA]
¡û
>W1610014637
AOME01000074
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
35105
35027
-
Pseudo
CAT
[ENA]
¡û
>W1610018869
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
259573
259497
-
Pseudo
CAT
[ENA]
¡û
>W1610024351
ATYM01000001
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
942673
942749
+
Met
CAT
[ENA]
¡û
>W1610024363
ATYM01000002
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
1182153
1182229
+
Met
CAT
[ENA]
¡û
>W1610029942
AXZD01000009
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
220884
220808
-
Pseudo
CAT
[ENA]
¡û
>W1610040563
BAFM01000019
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
8923
9001
+
Pseudo
CAT
[ENA]
¡û
>W1610046840
BBCV01000008
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
5244
5320
+
Pseudo
CAT
[ENA]
¡û
>W1610061910
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
3019761
3019837
+
Pseudo
CAT
[ENA]
¡û
>W1610061953
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
2965159
2965083
-
Pseudo
CAT
[ENA]
¡û
>W1610083015
CBMB010000003
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
323278
323203
-
Pseudo
CAT
[ENA]
¡û
>W1610682132
LKMK01000044
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
15177
15252
+
Pseudo
CAT
[ENA]
¡û
>W1610682202
LKMM01000106
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g27 [LKMM]
7922
7998
+
Pseudo
CAT
[ENA]
¡û
>W1610682539
LKNC01000028
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
7315
7391
+
Pseudo
CAT
[ENA]
¡û
>W1610682567
LKND01000017
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
21708
21783
+
Pseudo
CAT
[ENA]
¡û
>W1610682619
LKNF01000021
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g28 [LKNF]
10269
10195
-
Pseudo
CAT
[ENA]
¡û
>W1610682650
LKNG01000014
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
19588
19663
+
Pseudo
CAT
[ENA]
¡û
>W1610881030
LRHL01000034
Euryarchaeota
Haloarcula sp. K1 [LRHL]
123111
123187
+
Pseudo
CAT
[ENA]
¡û
>W1610925053
LTAZ01000005
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
585414
585338
-
Pseudo
CAT
[ENA]
¡û
>W1610986959
LWHG01000031
Euryarchaeota
Haladaptatus sp. R4 [LWHG]
52475
52551
+
Pseudo
CAT
[ENA]
¡û
>W1610986960
LWHG01000031
Euryarchaeota
Haladaptatus sp. R4 [LWHG]
52756
52832
+
Pseudo
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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