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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156195 (64 seq.)
>A171001290
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
458937
459011
+
Glu
CTC
-
¡û
>A171003047
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
1685246
1685320
+
Glu
CTC
-
¡û
>A171003186
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
1149082
1149008
-
Glu
CTC
-
¡û
>A171003497
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1721029
1720954
-
Glu
CTC
-
¡û
>A171003733
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
2641522
2641596
+
Glu
CTC
-
¡û
>A171004140
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
1700898
1700973
+
Glu
CTC
-
¡û
>A171006869
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2817706
2817632
-
Glu
CTC
-
¡û
>A171007029
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
139996
139921
-
Glu
CTC
-
¡û
>WENV180318452
OBKM01000947
[OBKM] metagenome; water
12176
12250
+
Glu
CTC
[ENA]
¢þ
>WENV170679990
LFCJ01002291
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5608
5533
-
Glu
CTC
[ENA]
¢þ
>WENV170681685
LFFM01002063
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
1250
1176
-
Glu
CTC
[ENA]
¢þ
>WENV170682107
LFFM01006167
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6595
6671
+
Glu
CTC
[ENA]
¢þ
>WENV170702573
LKMJ01002633
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
13655
13733
+
Glu
CTC
[ENA]
¢þ
>WENV170703317
LKMJ01009514
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7049
6975
-
Glu
CTC
[ENA]
¢þ
>WENV170703372
LKMJ01010368
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2938
2860
-
Glu
CTC
[ENA]
¢þ
>WENV170703449
LKMJ01011821
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6238
6161
-
Glu
CTC
[ENA]
¢þ
>WENV170704031
LKMJ01020943
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
76
2
-
Glu
CTC
[ENA]
¢þ
>WENV170704158
LKMJ01023931
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5115
5041
-
Glu
CTC
[ENA]
¢þ
>PL191000879
CP031304
Euryarchaeota
Haloterrigena jeotgali A29 plasmid:unnamed6 (CP031304)
415362
415436
+
Glu
CTC
[ENA]
¡û
>W1910226712
FMZP01000043
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
9069
9143
+
Glu
CTC
[ENA]
¡û
>W1910226719
FNBK01000001
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
100172
100098
-
Glu
CTC
[ENA]
¡û
>W1910228523
FNQT01000002
Euryarchaeota
Haloplanus vescus CGMCC 1.8712 [FNQT]
289181
289107
-
Glu
CTC
[ENA]
¡û
>W1910229714
FOCX01000027
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
1913
1839
-
Glu
CTC
[ENA]
¡û
>W1910229793
FOFD01000001
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
807131
807056
-
Glu
CTC
[ENA]
¡û
>W1910229897
FOIC01000005
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
232418
232492
+
Glu
CTC
[ENA]
¡û
>W1910230834
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
1262195
1262120
-
Glu
CTC
[ENA]
¡û
>W1910340529
FTNR01000001
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
183058
183132
+
Glu
CTC
[ENA]
¡û
>W1910568522
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
1483778
1483852
+
Glu
CTC
[ENA]
¡û
>W1910572569
JMIP02000017
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
367549
367474
-
Glu
CTC
[ENA]
¡û
>W1910572712
JNCS01000003
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
32489
32415
-
Glu
CTC
[ENA]
¡û
>W1910583001
JXAN01000005
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
3136
3062
-
Glu
CTC
[ENA]
¡û
>W1910646143
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
1443365
1443291
-
Glu
CTC
[ENA]
¡û
>W1910657548
MASN01000001
Euryarchaeota
Natrialba sp. SSL1 [MASN]
233612
233686
+
Glu
CTC
[ENA]
¡û
>W1910826109
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
112979
112905
-
Glu
CTC
[ENA]
¡û
>W1911434001
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2186864
2186790
-
Glu
CTC
[ENA]
¡û
>W1911572222
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
3806565
3806640
+
Glu
CTC
[ENA]
¡û
>W1911709175
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
2267125
2267051
-
Glu
CTC
[ENA]
¡û
>W1610001059
ACIT01000003
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
290481
290407
-
Glu
CTC
[ENA]
¡û
>W1610004143
AGIN01000013
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
129685
129759
+
Glu
CTC
[ENA]
¡û
>W1610005376
AJVG01000010
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
39869
39795
-
Glu
CTC
[ENA]
¡û
>W1610011709
AOHS01000010
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
64948
65022
+
Glu
CTC
[ENA]
¡û
>W1610011933
AOHX01000025
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
176134
176208
+
Glu
CTC
[ENA]
¡û
>W1610011976
AOHY01000002
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
19184
19110
-
Glu
CTC
[ENA]
¡û
>W1610012055
AOHZ01000091
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
6270
6195
-
Glu
CTC
[ENA]
¡û
>W1610012086
AOIA01000121
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
13417
13342
-
Glu
CTC
[ENA]
¡û
>W1610012141
AOIB01000031
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
20535
20460
-
Glu
CTC
[ENA]
¡û
>W1610012229
AOID01000051
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
76619
76693
+
Glu
CTC
[ENA]
¡û
>W1610012259
AOIE01000080
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
36366
36440
+
Glu
CTC
[ENA]
¡û
>W1610012291
AOII01000034
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
34695
34770
+
Glu
CTC
[ENA]
¡û
>W1610012328
AOIJ01000033
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
89229
89155
-
Glu
CTC
[ENA]
¡û
>W1610012389
AOIK01000026
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
91355
91429
+
Glu
CTC
[ENA]
¡û
>W1610012459
AOIM01000009
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
155891
155966
+
Glu
CTC
[ENA]
¡û
>W1610012518
AOIN01000064
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
109732
109657
-
Glu
CTC
[ENA]
¡û
>W1610012696
AOIR01000059
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
248453
248527
+
Glu
CTC
[ENA]
¡û
>W1610012783
AOIT01000035
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
112623
112697
+
Glu
CTC
[ENA]
¡û
>W1610014594
AOMD01000030
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
29621
29696
+
Glu
CTC
[ENA]
¡û
>W1610014626
AOME01000056
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
38308
38234
-
Glu
CTC
[ENA]
¡û
>W1610020289
ASGZ01000023
Euryarchaeota
Candidatus Halobonum tyrrellensis tyrrellensis G22 [ASGZ]
8825
8750
-
Glu
CTC
[ENA]
¡û
>W1610024355
ATYM01000002
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
9282
9358
+
Glu
CTC
[ENA]
¡û
>W1610040539
BAFM01000006
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
19559
19633
+
Glu
CTC
[ENA]
¡û
>W1610046848
BBCV01000020
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
2308
2234
-
Glu
CTC
[ENA]
¡û
>W1610671366
LKCV01000019
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
15796
15871
+
Glu
CTC
[ENA]
¡û
>W1610675782
LKIR01000119
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
56519
56444
-
Glu
CTC
[ENA]
¡û
>W1610675783
LKIR01000119
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
56277
56203
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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