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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156206 (98 seq.)
>A171000742
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
3113423
3113348
-
Val
CAC
-
¡û
>A171001131
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2385080
2385155
+
Val
CAC
-
¡û
>A171001324
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
382459
382385
-
Val
CAC
-
¡û
>A171002725
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1703579
1703504
-
Val
CAC
-
¡û
>A171003110
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
2932952
2932878
-
Val
CAC
-
¡û
>A171003160
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
1023923
1023998
+
Val
CAC
-
¡û
>A171003489
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
2734377
2734303
-
Val
CAC
-
¡û
>A171004150
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
2027144
2027069
-
Val
CAC
-
¡û
>A171006935
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
2293790
2293715
-
Val
CAC
-
¡û
>A171006959
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
1419201
1419275
+
Val
CAC
-
¡û
>A171007010
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
3523339
3523264
-
Val
CAC
-
¡û
>WENV170679667
LFCJ01000111
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
29
103
+
Val
CAC
[ENA]
¢þ
>WENV170679789
LFCJ01000479
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
292
218
-
Val
CAC
[ENA]
¢þ
>WENV170679816
LFCJ01000635
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
3523
3448
-
Val
CAC
[ENA]
¢þ
>WENV170679869
LFCJ01001107
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
10016
10090
+
Val
CAC
[ENA]
¢þ
>WENV170679876
LFCJ01001198
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
17711
17634
-
Val
CAC
[ENA]
¢þ
>WENV170680066
LFCJ01003414
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
52
126
+
Val
CAC
[ENA]
¢þ
>WENV170680209
LFCJ01005926
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
76
2
-
Val
CAC
[ENA]
¢þ
>WENV170680252
LFCJ01006783
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
7953
8028
+
Val
CAC
[ENA]
¢þ
>WENV170680389
LFCJ01010239
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
16
90
+
Val
CAC
[ENA]
¢þ
>WENV170680466
LFCJ01011891
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5882
5956
+
Val
CAC
[ENA]
¢þ
>WENV170681364
LFFM01000596
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
17729
17803
+
Val
CAC
[ENA]
¢þ
>WENV170681451
LFFM01000942
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
20604
20678
+
Val
CAC
[ENA]
¢þ
>WENV170681695
LFFM01002091
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4470
4544
+
Val
CAC
[ENA]
¢þ
>WENV170681963
LFFM01004324
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
333
407
+
Val
CAC
[ENA]
¢þ
>WENV170702920
LKMJ01004852
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4684
4610
-
Val
CAC
[ENA]
¢þ
>WENV170702961
LKMJ01005089
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4447
4521
+
Val
CAC
[ENA]
¢þ
>WENV170703018
LKMJ01005633
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3568
3642
+
Val
CAC
[ENA]
¢þ
>WENV170703108
LKMJ01006677
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
107
181
+
Val
CAC
[ENA]
¢þ
>WENV170703246
LKMJ01008443
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1096
1022
-
Val
CAC
[ENA]
¢þ
>WENV170703310
LKMJ01009280
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
9124
9198
+
Val
CAC
[ENA]
¢þ
>WENV170703382
LKMJ01010512
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
8450
8376
-
Val
CAC
[ENA]
¢þ
>WENV170703392
LKMJ01010779
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7904
7830
-
Val
CAC
[ENA]
¢þ
>WENV170703573
LKMJ01013905
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3627
3701
+
Val
CAC
[ENA]
¢þ
>WENV170704004
LKMJ01020555
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4692
4618
-
Val
CAC
[ENA]
¢þ
>PL191000890
CP031306
Euryarchaeota
Natronorubrum bangense JCM 10635 plasmid:unnamed1 (CP031306)
202928
202854
-
Val
CAC
[ENA]
¡û
>W1910226683
FMZP01000004
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
132673
132598
-
Val
CAC
[ENA]
¡û
>W1910226903
FNFE01000001
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
1116242
1116167
-
Val
CAC
[ENA]
¡û
>W1910227139
FNLC01000002
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
774840
774914
+
Val
CAC
[ENA]
¡û
>W1910229321
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
376933
377007
+
Val
CAC
[ENA]
¡û
>W1910229790
FOFD01000001
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
545036
545110
+
Val
CAC
[ENA]
¡û
>W1910229891
FOIC01000004
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
144250
144325
+
Val
CAC
[ENA]
¡û
>W1910229925
FOIS01000001
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
750795
750720
-
Val
CAC
[ENA]
¡û
>W1910230256
FOKW01000009
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
69288
69214
-
Val
CAC
[ENA]
¡û
>W1910230424
FORO01000001
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
19322
19248
-
Val
CAC
[ENA]
¡û
>W1910230780
FOZK01000001
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
1530705
1530779
+
Val
CAC
[ENA]
¡û
>W1910230829
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
876018
876093
+
Val
CAC
[ENA]
¡û
>W1910340510
FTNP01000003
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
362089
362163
+
Val
CAC
[ENA]
¡û
>W1910340550
FTNR01000008
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
62849
62774
-
Val
CAC
[ENA]
¡û
>W1910572550
JMIP02000013
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
191842
191916
+
Val
CAC
[ENA]
¡û
>W1910572715
JNCS01000005
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
60281
60207
-
Val
CAC
[ENA]
¡û
>W1910575872
JROF01000005
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
42759
42684
-
Val
CAC
[ENA]
¡û
>W1910657551
MASN01000001
Euryarchaeota
Natrialba sp. SSL1 [MASN]
154235
154160
-
Val
CAC
[ENA]
¡û
>W1910826108
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
214479
214404
-
Val
CAC
[ENA]
¡û
>W1911434008
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
1025680
1025605
-
Val
CAC
[ENA]
¡û
>W1911580794
PEND01000001
Euryarchaeota
Halegenticoccus soli SYSU A9-0 [PEND]
820972
821047
+
Val
CAC
[ENA]
¡û
>W1911591315
PKKI01000002
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
152269
152343
+
Val
CAC
[ENA]
¡û
>W1911709956
QPND01000001
Euryarchaeota
Saliphagus sp. LR7 [QPND]
265686
265761
+
Val
CAC
[ENA]
¡û
>W1911717787
QQRR01000002
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
773862
773936
+
Val
CAC
[ENA]
¡û
>W1911718011
QQTY01000005
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
59493
59418
-
Val
CAC
[ENA]
¡û
>W1610000862
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
724580
724505
-
Val
CAC
[ENA]
¡û
>W1610001053
ACIT01000003
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
366960
367034
+
Val
CAC
[ENA]
¡û
>W1610004056
AGFZ01000064
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
81610
81533
-
Val
CAC
[ENA]
¡û
>W1610004075
AGIM01000001
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
150459
150385
-
Val
CAC
[ENA]
¡û
>W1610005378
AJVG01000012
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
32574
32651
+
Val
CAC
[ENA]
¡û
>W1610011706
AOHS01000009
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
151852
151778
-
Val
CAC
[ENA]
¡û
>W1610011900
AOHW01000007
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
63944
64018
+
Val
CAC
[ENA]
¡û
>W1610011930
AOHX01000025
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
84745
84819
+
Val
CAC
[ENA]
¡û
>W1610012013
AOHY01000057
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
22988
23062
+
Val
CAC
[ENA]
¡û
>W1610012028
AOHZ01000040
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
3529
3452
-
Val
CAC
[ENA]
¡û
>W1610012089
AOIA01000123
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
15318
15243
-
Val
CAC
[ENA]
¡û
>W1610012138
AOIB01000031
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
117587
117510
-
Val
CAC
[ENA]
¡û
>W1610012183
AOIC01000111
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
38114
38040
-
Val
CAC
[ENA]
¡û
>W1610012214
AOID01000035
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
49347
49424
+
Val
CAC
[ENA]
¡û
>W1610012316
AOII01000091
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
251
176
-
Val
CAC
[ENA]
¡û
>W1610012327
AOIJ01000032
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
120845
120922
+
Val
CAC
[ENA]
¡û
>W1610012395
AOIK01000029
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
37414
37340
-
Val
CAC
[ENA]
¡û
>W1610012415
AOIL01000013
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
100960
101037
+
Val
CAC
[ENA]
¡û
>W1610012462
AOIM01000009
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
81455
81378
-
Val
CAC
[ENA]
¡û
>W1610012525
AOIN01000067
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
131872
131798
-
Val
CAC
[ENA]
¡û
>W1610012548
AOIO01000021
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
38125
38050
-
Val
CAC
[ENA]
¡û
>W1610012607
AOIP01000031
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
318750
318825
+
Val
CAC
[ENA]
¡û
>W1610012623
AOIQ01000002
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
62828
62902
+
Val
CAC
[ENA]
¡û
>W1610012734
AOIS01000037
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
299323
299249
-
Val
CAC
[ENA]
¡û
>W1610012786
AOIT01000038
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
53954
54031
+
Val
CAC
[ENA]
¡û
>W1610014444
AOLZ01000076
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
35490
35413
-
Val
CAC
[ENA]
¡û
>W1610014460
AOMA01000063
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
98840
98765
-
Val
CAC
[ENA]
¡û
>W1610019038
ARPH01000006
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
630104
630030
-
Val
CAC
[ENA]
¡û
>W1610046870
BBCV01000075
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
7570
7493
-
Val
CAC
[ENA]
¡û
>W1610082960
CBMA010000004
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
7334
7259
-
Val
CAC
[ENA]
¡û
>W1610083022
CBMB010000004
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
602314
602388
+
Val
CAC
[ENA]
¡û
>W1610671381
LKCV01000131
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
5283
5206
-
Val
CAC
[ENA]
¡û
>W1610682147
LKMK01000191
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
16
90
+
Val
CAC
[ENA]
¡û
>W1610682198
LKMM01000086
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g27 [LKMM]
76
2
-
Val
CAC
[ENA]
¡û
>W1610682542
LKNC01000047
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
4470
4544
+
Val
CAC
[ENA]
¡û
>W1610682582
LKND01000066
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
20604
20678
+
Val
CAC
[ENA]
¡û
>W1610682648
LKNG01000011
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
17729
17803
+
Val
CAC
[ENA]
¡û
>W1610799810
LOPU01000030
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
49211
49287
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK