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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156250 (17 seq.)
>WENV181240133
OFFE01000145
[OFFE] mouse gut metagenome; faeces
18950
19026
+
Asp
GTC
[ENA]
¢þ
>WENV181241201
OFFF01000143
[OFFF] mouse gut metagenome; faeces
9660
9736
+
Asp
GTC
[ENA]
¢þ
>WENV181245767
OFFJ01001721
[OFFJ] mouse gut metagenome; faeces
6795
6871
+
Asp
GTC
[ENA]
¢þ
>WENV181252228
OFFP01007176
[OFFP] mouse gut metagenome; faeces
424
500
+
Asp
GTC
[ENA]
¢þ
>WENV181253292
OFFQ01003234
[OFFQ] mouse gut metagenome; faeces
7026
6950
-
Asp
GTC
[ENA]
¢þ
>WENV181261396
OFFX01031768
[OFFX] mouse gut metagenome; faeces
295
371
+
Asp
GTC
[ENA]
¢þ
>WENV181263663
OFFZ01008249
[OFFZ] mouse gut metagenome; faeces
1904
1828
-
Asp
GTC
[ENA]
¢þ
>WENV181264208
OFGA01000213
[OFGA] mouse gut metagenome; faeces
8935
9011
+
Asp
GTC
[ENA]
¢þ
>WENV181270593
OFGF01000304
[OFGF] mouse gut metagenome; faeces
38074
38150
+
Asp
GTC
[ENA]
¢þ
>WENV181272002
OFGG01001328
[OFGG] mouse gut metagenome; faeces
8274
8198
-
Asp
GTC
[ENA]
¢þ
>WENV181273585
OFGH01003940
[OFGH] mouse gut metagenome; faeces
6787
6711
-
Asp
GTC
[ENA]
¢þ
>WENV181282432
OFGP01014663
[OFGP] mouse gut metagenome; faeces
933
1009
+
Asp
GTC
[ENA]
¢þ
>WENV181283214
OFGQ01001358
[OFGQ] mouse gut metagenome; faeces
6845
6769
-
Asp
GTC
[ENA]
¢þ
>WENV181299806
OFHM01049323
[OFHM] mouse gut metagenome; faeces
264
340
+
Asp
GTC
[ENA]
¢þ
>WENV181300625
OFHN01003048
[OFHN] mouse gut metagenome; faeces
361
437
+
Asp
GTC
[ENA]
¢þ
>WENV181302210
OFHO01006801
[OFHO] mouse gut metagenome; faeces
991
915
-
Asp
GTC
[ENA]
¢þ
>WENV181303022
OFHP01000803
[OFHP] mouse gut metagenome; faeces
7668
7592
-
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK