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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156252 (17 seq.)
>A171004018
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
339313
339237
-
Glu
TTC
-
¡û
>A171007314
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1716146
1716222
+
Glu
TTC
-
¡û
>A171007344
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
964915
964991
+
Glu
TTC
-
¡û
>A171007396
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2096683
2096759
+
Glu
TTC
-
¡û
>WENV180037495
FVAA011132156
[FVAA] soil metagenome; Soil
2
80
+
Glu
TTC
[ENA]
¢þ
>WENV181230060
OFEK01000232
[OFEK] activated sludge metagenome; Anaerobic digester
73152
73076
-
Glu
TTC
[ENA]
¢þ
>WENV170021462
BBPF01012944
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1968
1892
-
Glu
TTC
[ENA]
¢þ
>At2069
AM114193
Euryarchaeota
Methanocella arvoryzae MRE50 [AM114193]
1335580
1335654
+
Glu
TTC
[Ensembl]
¡û
>WENV170671062
LAHU01010551
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
3822
3746
-
Glu
TTC
[ENA]
¢þ
>WENV170677320
LDZT01004936
[LDZT] terrestrial metagenome; oil reservoir sample SB1
4547
4623
+
Glu
TTC
[ENA]
¢þ
>WENV170972557
MTKX01034777
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
508
432
-
Glu
TTC
[ENA]
¢þ
>WENV170976348
MTKZ01006900
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2345
2421
+
Glu
TTC
[ENA]
¢þ
>W1610006214
AMGN01000001
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
13714
13638
-
Glu
TTC
[ENA]
¡û
>W1610011022
AMPO01000008
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
50133
50057
-
Glu
TTC
[ENA]
¡û
>W1610049152
BBES01000007
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
95993
96069
+
Glu
TTC
[ENA]
¡û
>W1610613874
LGGL01000043
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
4547
4623
+
Glu
TTC
[ENA]
¡û
>ENV000764
AM114193
Environmental sample from ENV division of INSDC
1335580
1335657
+
Glu
TTC
[Ensembl]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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