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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156288 (26 seq.)
>A171000473
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
466514
466591
+
Pro
CGG
-
¡û
>A171000702
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
1643752
1643829
+
Pro
CGG
-
¡û
>A171001877
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1530128
1530205
+
Pro
CGG
-
¡û
>A171002306
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
1617082
1617005
-
Pro
CGG
-
¡û
>A171002667
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1912548
1912625
+
Pro
CGG
-
¡û
>A171003873
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
1202586
1202663
+
Pro
CGG
-
¡û
>A171004048
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1651951
1652028
+
Pro
CGG
-
¡û
>A171004216
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
1126274
1126351
+
Pro
CGG
-
¡û
>A171004293
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1755095
1755018
-
Pro
CGG
-
¡û
>A171006356
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1658658
1658735
+
Pro
CGG
-
¡û
>A171006486
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
1547179
1547102
-
Pro
CGG
-
¡û
>A171006606
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
843834
843757
-
Pro
CGG
-
¡û
>At1960
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1727255
1727178
-
Pro
CGG
[Ensembl]
¡û
>WENV170676001
LDZQ01001703
[LDZQ] terrestrial metagenome; oil reservoir sample I2
3365
3442
+
Pro
CGG
[ENA]
¢þ
>WENV170676292
LDZR01002224
[LDZR] terrestrial metagenome; oil reservoir sample K2
8334
8411
+
Pro
CGG
[ENA]
¢þ
>WENV170676727
LDZS01002041
[LDZS] terrestrial metagenome; oil reservoir sample K3
18612
18689
+
Pro
CGG
[ENA]
¢þ
>W1910200327
FJMQ01000106
Euryarchaeota
Thermococcus litoralis [FJMQ]
25919
25996
+
Pro
CGG
[ENA]
¡û
>W1610000729
ABSF01000012
Euryarchaeota
Thermococcus barophilus MP [ABSF]
247884
247807
-
Pro
CGG
[ENA]
¡û
>W1610000877
ABXN01000011
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
45163
45240
+
Pro
CGG
[ENA]
¡û
>W1610004909
AHVB01000013
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
12609
12532
-
Pro
CGG
[ENA]
¡û
>W1610004935
AHVB01000062
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
13874
13797
-
Pro
CGG
[ENA]
¡û
>W1610005568
AKID01000024
Euryarchaeota
Thermococcus sp. PK [AKID]
23659
23582
-
Pro
CGG
[ENA]
¡û
>W1610548855
JXCG01000001
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
418399
418476
+
Pro
CGG
[ENA]
¡û
>W1610612463
LGET01000162
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
3365
3442
+
Pro
CGG
[ENA]
¡û
>W1610612797
LGFD01000003
Euryarchaeota
Thermococcus sibiricus [LGFD]
8334
8411
+
Pro
CGG
[ENA]
¡û
>W1610613039
LGFJ01000012
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
18612
18689
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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