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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156289 (29 seq.)
>A171000207
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1834615
1834692
+
Asp
GTC
-
¡û
>A171000708
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
1321833
1321756
-
Asp
GTC
-
¡û
>A171001881
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1786404
1786327
-
Asp
GTC
-
¡û
>A171002591
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1007268
1007191
-
Asp
GTC
-
¡û
>A171003331
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
654102
654025
-
Asp
GTC
-
¡û
>A171003803
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
13049
12972
-
Asp
GTC
-
¡û
>A171003875
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
1603658
1603735
+
Asp
GTC
-
¡û
>A171004051
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1865784
1865707
-
Asp
GTC
-
¡û
>A171006352
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1237858
1237935
+
Asp
GTC
-
¡û
>A171006478
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
2068929
2068852
-
Asp
GTC
-
¡û
>A171007084
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
101321
101398
+
Asp
GTC
-
¡û
>WENV170676003
LDZQ01001799
[LDZQ] terrestrial metagenome; oil reservoir sample I2
93
170
+
Asp
GTC
[ENA]
¢þ
>WENV170676027
LDZR01000269
[LDZR] terrestrial metagenome; oil reservoir sample K2
9
86
+
Asp
GTC
[ENA]
¢þ
>WENV170676203
LDZR01001701
[LDZR] terrestrial metagenome; oil reservoir sample K2
2021
1944
-
Asp
GTC
[ENA]
¢þ
>WENV170676304
LDZR01002231
[LDZR] terrestrial metagenome; oil reservoir sample K2
92
169
+
Asp
GTC
[ENA]
¢þ
>WENV170676735
LDZS01002065
[LDZS] terrestrial metagenome; oil reservoir sample K3
92
169
+
Asp
GTC
[ENA]
¢þ
>W1910200330
FJMQ01000128
Euryarchaeota
Thermococcus litoralis [FJMQ]
16606
16683
+
Asp
GTC
[ENA]
¡û
>W1910229985
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
655420
655343
-
Asp
GTC
[ENA]
¡û
>W1910597277
LANF01000011
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
102777
102854
+
Asp
GTC
[ENA]
¡û
>W1610000709
ABSF01000006
Euryarchaeota
Thermococcus barophilus MP [ABSF]
2833
2756
-
Asp
GTC
[ENA]
¡û
>W1610004939
AHVB01000063
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
84420
84343
-
Asp
GTC
[ENA]
¡û
>W1610005569
AKID01000025
Euryarchaeota
Thermococcus sp. PK [AKID]
28539
28616
+
Asp
GTC
[ENA]
¡û
>W1610045083
BBBB01000014
Euryarchaeota
Thermococcus celer JCM 8558 [BBBB]
22151
22074
-
Asp
GTC
[ENA]
¡û
>W1610548884
JXCG01000009
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
55
132
+
Asp
GTC
[ENA]
¡û
>W1610612465
LGET01000258
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
93
170
+
Asp
GTC
[ENA]
¡û
>W1610612809
LGFD01000010
Euryarchaeota
Thermococcus sibiricus [LGFD]
92
169
+
Asp
GTC
[ENA]
¡û
>W1610613047
LGFJ01000036
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
92
169
+
Asp
GTC
[ENA]
¡û
>W1610638236
LIXN01000007
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
6530
6455
-
Asp
GTC
[ENA]
¡û
>W1610717938
LLYW01000034
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
33783
33860
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK