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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156290 (45 seq.)
>A171000199
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
626359
626436
+
Glu
TTC
-
¡û
>A171000478
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
644930
645007
+
Glu
TTC
-
¡û
>A171000709
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
1308817
1308740
-
Glu
TTC
-
¡û
>A171001866
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
530327
530404
+
Glu
TTC
-
¡û
>A171002170
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1120228
1120305
+
Glu
TTC
-
¡û
>A171002297
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
963448
963525
+
Glu
TTC
-
¡û
>A171002565
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
330502
330579
+
Glu
TTC
-
¡û
>A171002691
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
2933
2856
-
Glu
TTC
-
¡û
>A171003294
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
629432
629355
-
Glu
TTC
-
¡û
>A171003321
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
1937184
1937261
+
Glu
TTC
-
¡û
>A171003384
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
125157
125080
-
Glu
TTC
-
¡û
>A171003770
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
499590
499667
+
Glu
TTC
-
¡û
>A171003876
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
1615987
1616064
+
Glu
TTC
-
¡û
>A171004063
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
613834
613757
-
Glu
TTC
-
¡û
>A171004227
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
1238209
1238132
-
Glu
TTC
-
¡û
>A171004300
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
492555
492478
-
Glu
TTC
-
¡û
>A171004460
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
1687117
1687040
-
Glu
TTC
-
¡û
>A171005867
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
376059
376136
+
Glu
TTC
-
¡û
>A171006353
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1248482
1248559
+
Glu
TTC
-
¡û
>A171006493
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
461434
461357
-
Glu
TTC
-
¡û
>A171006612
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
422554
422477
-
Glu
TTC
-
¡û
>A171006660
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1729896
1729973
+
Glu
TTC
-
¡û
>A171007100
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
722412
722489
+
Glu
TTC
-
¡û
>A171007524
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
1251755
1251678
-
Glu
TTC
-
¡û
>At1818
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
1397625
1397548
-
Glu
TTC
[Ensembl]
¡û
>At1847
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
325222
325145
-
Glu
TTC
[Ensembl]
¡û
>At1878
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
539375
539452
+
Glu
TTC
[Ensembl]
¡û
>At1944
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
347219
347142
-
Glu
TTC
[Ensembl]
¡û
>WENV170675977
LDZQ01001548
[LDZQ] terrestrial metagenome; oil reservoir sample I2
8781
8858
+
Glu
TTC
[ENA]
¢þ
>WENV170676194
LDZR01001553
[LDZR] terrestrial metagenome; oil reservoir sample K2
5742
5665
-
Glu
TTC
[ENA]
¢þ
>WENV170676305
LDZR01002231
[LDZR] terrestrial metagenome; oil reservoir sample K2
13108
13185
+
Glu
TTC
[ENA]
¢þ
>WENV170676408
LDZR01002530
[LDZR] terrestrial metagenome; oil reservoir sample K2
5508
5431
-
Glu
TTC
[ENA]
¢þ
>WENV170676965
LDZS01003793
[LDZS] terrestrial metagenome; oil reservoir sample K3
27440
27363
-
Glu
TTC
[ENA]
¢þ
>W1910200331
FJMQ01000128
Euryarchaeota
Thermococcus litoralis [FJMQ]
28939
29016
+
Glu
TTC
[ENA]
¡û
>W1910229968
FOIW01000001
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
646683
646760
+
Glu
TTC
[ENA]
¡û
>W1910597262
LANF01000008
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
24314
24237
-
Glu
TTC
[ENA]
¡û
>W1610000704
ABSF01000003
Euryarchaeota
Thermococcus barophilus MP [ABSF]
56637
56560
-
Glu
TTC
[ENA]
¡û
>W1610000885
ABXN01000012
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
2933
2856
-
Glu
TTC
[ENA]
¡û
>W1610004940
AHVB01000063
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
72091
72014
-
Glu
TTC
[ENA]
¡û
>W1610005275
AJLF01000001
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
1013147
1013224
+
Glu
TTC
[ENA]
¡û
>W1610005580
AKID01000079
Euryarchaeota
Thermococcus sp. PK [AKID]
21395
21318
-
Glu
TTC
[ENA]
¡û
>W1610548885
JXCG01000010
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
4604
4681
+
Glu
TTC
[ENA]
¡û
>W1610612439
LGET01000007
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
8781
8858
+
Glu
TTC
[ENA]
¡û
>W1610612810
LGFD01000010
Euryarchaeota
Thermococcus sibiricus [LGFD]
13108
13185
+
Glu
TTC
[ENA]
¡û
>W1610717940
LLYW01000035
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
30989
31066
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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