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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156300 (44 seq.)
>A171000206
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1744039
1744116
+
Ile
GAT
-
¡û
>A171000508
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
391229
391152
-
Ile
GAT
-
¡û
>A171000705
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
1797617
1797540
-
Ile
GAT
-
¡û
>A171001880
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1842273
1842196
-
Ile
GAT
-
¡û
>A171002182
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1727104
1727027
-
Ile
GAT
-
¡û
>A171002318
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
443696
443619
-
Ile
GAT
-
¡û
>A171002590
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1116060
1115983
-
Ile
GAT
-
¡û
>A171002672
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1831704
1831627
-
Ile
GAT
-
¡û
>A171003271
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
1196909
1196986
+
Ile
GAT
-
¡û
>A171003330
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
759698
759621
-
Ile
GAT
-
¡û
>A171003347
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
599354
599431
+
Ile
GAT
-
¡û
>A171003801
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
249547
249472
-
Ile
GAT
-
¡û
>A171003893
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
988738
988661
-
Ile
GAT
-
¡û
>A171004050
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1917207
1917130
-
Ile
GAT
-
¡û
>A171004229
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
1043416
1043339
-
Ile
GAT
-
¡û
>A171004277
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1319221
1319298
+
Ile
GAT
-
¡û
>A171004434
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
743871
743948
+
Ile
GAT
-
¡û
>A171005887
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1953291
1953214
-
Ile
GAT
-
¡û
>A171006360
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1832297
1832222
-
Ile
GAT
-
¡û
>A171006477
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
2135421
2135344
-
Ile
GAT
-
¡û
>A171006584
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1282878
1282955
+
Ile
GAT
-
¡û
>A171007083
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
4985
5062
+
Ile
GAT
-
¡û
>A171007502
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
1397040
1397117
+
Ile
GAT
-
¡û
>WENV180634832
OCRB01124192
[OCRB] metagenome; diffuse fluid
95
172
+
Ile
GAT
[ENA]
¢þ
>At1813
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
1103101
1103024
-
Ile
GAT
[Ensembl]
¡û
>At1831
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
798047
798124
+
Ile
GAT
[Ensembl]
¡û
>At1898
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
1140795
1140718
-
Ile
GAT
[Ensembl]
¡û
>At1956
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1483734
1483657
-
Ile
GAT
[Ensembl]
¡û
>WENV170675998
LDZQ01001692
[LDZQ] terrestrial metagenome; oil reservoir sample I2
501
578
+
Ile
GAT
[ENA]
¢þ
>WENV170676310
LDZR01002236
[LDZR] terrestrial metagenome; oil reservoir sample K2
21383
21460
+
Ile
GAT
[ENA]
¢þ
>WENV170676734
LDZS01002060
[LDZS] terrestrial metagenome; oil reservoir sample K3
1707
1784
+
Ile
GAT
[ENA]
¢þ
>W1910200309
FJMQ01000070
Euryarchaeota
Thermococcus litoralis [FJMQ]
748
671
-
Ile
GAT
[ENA]
¡û
>W1910229997
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
6055
5978
-
Ile
GAT
[ENA]
¡û
>W1910597281
LANF01000011
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
156869
156794
-
Ile
GAT
[ENA]
¡û
>W1610000708
ABSF01000006
Euryarchaeota
Thermococcus barophilus MP [ABSF]
58702
58625
-
Ile
GAT
[ENA]
¡û
>W1610000888
ABXN01000013
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
35626
35703
+
Ile
GAT
[ENA]
¡û
>W1610004948
AHVB01000075
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
80589
80666
+
Ile
GAT
[ENA]
¡û
>W1610005295
AJLF01000002
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
526801
526724
-
Ile
GAT
[ENA]
¡û
>W1610005574
AKID01000039
Euryarchaeota
Thermococcus sp. PK [AKID]
22278
22201
-
Ile
GAT
[ENA]
¡û
>W1610548854
JXCG01000001
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
304067
304144
+
Ile
GAT
[ENA]
¡û
>W1610612460
LGET01000151
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
501
578
+
Ile
GAT
[ENA]
¡û
>W1610612815
LGFD01000015
Euryarchaeota
Thermococcus sibiricus [LGFD]
21383
21460
+
Ile
GAT
[ENA]
¡û
>W1610613046
LGFJ01000031
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
1707
1784
+
Ile
GAT
[ENA]
¡û
>W1610638235
LIXN01000007
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
119249
119172
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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