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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156301 (47 seq.)
>A171000212
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1401205
1401128
-
Tyr
GTA
-
¡û
>A171000514
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
82989
82912
-
Tyr
GTA
-
¡û
>A171000720
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
80959
80882
-
Tyr
GTA
-
¡û
>A171001884
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1774420
1774343
-
Tyr
GTA
-
¡û
>A171002173
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1400189
1400266
+
Tyr
GTA
-
¡û
>A171002291
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
380734
380811
+
Tyr
GTA
-
¡û
>A171002576
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1490859
1490936
+
Tyr
GTA
-
¡û
>A171002677
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1486976
1486899
-
Tyr
GTA
-
¡û
>A171003265
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
800185
800262
+
Tyr
GTA
-
¡û
>A171003313
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
1150935
1151012
+
Tyr
GTA
-
¡û
>A171003352
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
856662
856739
+
Tyr
GTA
-
¡û
>A171003784
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
1825119
1825196
+
Tyr
GTA
-
¡û
>A171003895
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
814645
814568
-
Tyr
GTA
-
¡û
>A171004054
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1855796
1855719
-
Tyr
GTA
-
¡û
>A171004234
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
765703
765626
-
Tyr
GTA
-
¡û
>A171004281
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1374909
1374986
+
Tyr
GTA
-
¡û
>A171005897
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1044467
1044390
-
Tyr
GTA
-
¡û
>A171006338
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1072
1149
+
Tyr
GTA
-
¡û
>A171006481
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
2038169
2038092
-
Tyr
GTA
-
¡û
>A171006605
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
907750
907673
-
Tyr
GTA
-
¡û
>A171006674
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
847290
847213
-
Tyr
GTA
-
¡û
>A171007109
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
1537128
1537051
-
Tyr
GTA
-
¡û
>A171007496
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
710026
710103
+
Tyr
GTA
-
¡û
>At1810
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
941806
941729
-
Tyr
GTA
[Ensembl]
¡û
>At1836
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
1054563
1054640
+
Tyr
GTA
[Ensembl]
¡û
>At1883
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
909699
909776
+
Tyr
GTA
[Ensembl]
¡û
>At1935
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1913492
1913569
+
Tyr
GTA
[Ensembl]
¡û
>WENV170676308
LDZR01002234
[LDZR] terrestrial metagenome; oil reservoir sample K2
9174
9097
-
Tyr
GTA
[ENA]
¢þ
>WENV170676730
LDZS01002050
[LDZS] terrestrial metagenome; oil reservoir sample K3
84
7
-
Tyr
GTA
[ENA]
¢þ
>WENV170676738
LDZS01002072
[LDZS] terrestrial metagenome; oil reservoir sample K3
9530
9453
-
Tyr
GTA
[ENA]
¢þ
>WENV170779396
LZQN01005624
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
120
45
-
Tyr
GTA
[ENA]
¢þ
>W1910200307
FJMQ01000029
Euryarchaeota
Thermococcus litoralis [FJMQ]
1453
1376
-
Tyr
GTA
[ENA]
¡û
>W1910230003
FOIW01000003
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
254796
254719
-
Tyr
GTA
[ENA]
¡û
>W1910597282
LANF01000011
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
111024
110947
-
Tyr
GTA
[ENA]
¡û
>W1610000726
ABSF01000012
Euryarchaeota
Thermococcus barophilus MP [ABSF]
3592
3669
+
Tyr
GTA
[ENA]
¡û
>W1610000870
ABXN01000007
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
27148
27071
-
Tyr
GTA
[ENA]
¡û
>W1610004919
AHVB01000035
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
42580
42657
+
Tyr
GTA
[ENA]
¡û
>W1610005299
AJLF01000002
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
337468
337391
-
Tyr
GTA
[ENA]
¡û
>W1610005577
AKID01000052
Euryarchaeota
Thermococcus sp. PK [AKID]
4037
4114
+
Tyr
GTA
[ENA]
¡û
>W1610045081
BBBB01000012
Euryarchaeota
Thermococcus celer JCM 8558 [BBBB]
1306
1383
+
Tyr
GTA
[ENA]
¡û
>W1610045154
BBBE01000001
Euryarchaeota
Thermococcus peptonophilus JCM 9653 [BBBE]
346951
347028
+
Tyr
GTA
[ENA]
¡û
>W1610046815
BBCU01000001
Euryarchaeota
Thermococcus sp. JCM 11816 [BBCU]
296030
296107
+
Tyr
GTA
[ENA]
¡û
>W1610548858
JXCG01000001
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
185677
185600
-
Tyr
GTA
[ENA]
¡û
>W1610612813
LGFD01000013
Euryarchaeota
Thermococcus sibiricus [LGFD]
9174
9097
-
Tyr
GTA
[ENA]
¡û
>W1610613042
LGFJ01000021
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
84
7
-
Tyr
GTA
[ENA]
¡û
>W1610613050
LGFJ01000043
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
9530
9453
-
Tyr
GTA
[ENA]
¡û
>W1610717910
LLYW01000001
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
57262
57339
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK