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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156323 (24 seq.)
>A171004735
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
3796512
3796586
+
Pro
GGG
-
¡û
>A171005377
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
2383729
2383652
-
Pro
GGG
-
¡û
>A173000202
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2819247
2819324
+
Pro
GGG
-
¡û
>A173000210
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2521375
2521298
-
Pro
GGG
-
¡û
>A173000211
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1520652
1520729
+
Pro
GGG
-
¡û
>A173000222
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
2624316
2624239
-
Pro
GGG
-
¡û
>A173000227
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
571651
571574
-
Pro
GGG
-
¡û
>A173000228
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
553157
553080
-
Pro
GGG
-
¡û
>A173000229
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
4210804
4210881
+
Pro
GGG
-
¡û
>A173000234
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
573132
573209
+
Pro
GGG
-
¡û
>A173000243
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
2519610
2519533
-
Pro
GGG
-
¡û
>WENV170014814
AZIB01002740
[AZIB] marine sediment metagenome; sample MGS-HAV from oil contaminated site at the Gulf of Genoa where a Haven tanker sank in
136
214
+
Pro
GGG
[ENA]
¢þ
>At1004
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
1810391
1810317
-
Pro
GGG
[Ensembl]
¡û
>At1485
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
1854338
1854261
-
Pro
GGG
[Ensembl]
¡û
>W1930003968
FPAO01000011
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
100021
99944
-
Pro
GGG
[ENA]
¡û
>W1930011552
LMVP01000089
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
8237
8314
+
Pro
GGG
[ENA]
¡û
>W1930012021
LZPK01000201
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
6287
6210
-
Pro
GGG
[ENA]
¡û
>W1910229857
FOHQ01000005
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
134199
134122
-
Pro
GGG
[ENA]
¡û
>W1910575280
JRHO01000014
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
944721
944644
-
Pro
GGG
[ENA]
¡û
>W1610000140
AADH02000008
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
28586
28508
-
Pseudo
GGG
[ENA]
¡û
>W1630000003
AAAR03000002
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
109525
109448
-
Pseudo
GGG
[ENA]
¡û
>W1630002232
BBEF01000125
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
6783
6706
-
Pseudo
GGG
[ENA]
¡û
>W1630010475
LFRP01000035
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
5955
6032
+
Pseudo
GGG
[ENA]
¡û
>W1630012157
LKAZ01000036
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
4003
4080
+
Pseudo
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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