This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156411 (109 seq.)
>W1710876955
LMPS01000001
Bacteroidota
Dyadobacter sp. Leaf189 [LMPS]
262051
262128
+
Val
TAC
[ENA]
¡û
>W1710885921
LMXN01000017
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
22386
22461
+
Val
TAC
[ENA]
¡û
>W1710885922
LMXN01000017
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
22504
22579
+
Val
TAC
[ENA]
¡û
>W1711385151
MEDT01000168
Bacteroidota
Cytophagaceae bacterium SCN 52-12 [MEDT]
1712
1637
-
Val
TAC
[ENA]
¡û
>W1711502439
MKSR01000038
Bacteroidota
Dyadobacter sp. 50-39 [MKSR]
8022
8099
+
Val
TAC
[ENA]
¡û
>W1711606595
MORL01000024
Bacteroidota
Arsenicibacter rosenii [MORL]
16423
16346
-
Val
TAC
[ENA]
¡û
>W1711704556
MSPQ01000002
Bacteroidota
Algoriphagus marinus am2 [MSPQ]
510096
510171
+
Val
TAC
[ENA]
¡û
>W1711704557
MSPQ01000002
Bacteroidota
Algoriphagus marinus am2 [MSPQ]
510212
510287
+
Val
TAC
[ENA]
¡û
>W1711707904
MSSV01000031
Bacteroidota
Algoriphagus ratkowskyi [MSSV]
20153
20228
+
Val
TAC
[ENA]
¡û
>W1711707905
MSSV01000031
Bacteroidota
Algoriphagus ratkowskyi [MSSV]
20333
20408
+
Val
TAC
[ENA]
¡û
>W1711707939
MSSW01000101
Bacteroidota
Algoriphagus antarcticus [MSSW]
5649
5574
-
Val
TAC
[ENA]
¡û
>W1711707940
MSSW01000101
Bacteroidota
Algoriphagus antarcticus [MSSW]
5552
5477
-
Val
TAC
[ENA]
¡û
>C171037568
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
74082
74007
-
Val
TAC
-
¡û
>W131053391
AMZY02000024
Bacteroidota
Mariniradius saccharolyticus AK6 [AMZY]
86
11
-
Val
TAC
[ENA]
¡û
>W131167744
ARDN01000001
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
25064
25139
+
Val
TAC
[ENA]
¡û
>W131167745
ARDN01000001
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
25190
25267
+
Val
TAC
[ENA]
¡û
>W131169935
ARFD01000030
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
31626
31549
-
Val
TAC
[ENA]
¡û
>W131180703
ARNI01000007
Bacteroidota
Dyadobacter beijingensis DSM 21582 [ARNI]
68724
68801
+
Val
TAC
[ENA]
¡û
>W131181655
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
2699366
2699443
+
Val
TAC
[ENA]
¡û
>W131211906
ATNM01000065
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
25240
25317
+
Val
TAC
[ENA]
¡û
>W131211907
ATNM01000065
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
25484
25559
+
Val
TAC
[ENA]
¡û
>W131221752
AUAS01000003
Bacteroidota
Dyadobacter alkalitolerans DSM 23607 [AUAS]
291399
291322
-
Val
TAC
[ENA]
¡û
>W131223208
AUBX01000011
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
431126
431201
+
Val
TAC
[ENA]
¡û
>W131223209
AUBX01000011
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
431229
431304
+
Val
TAC
[ENA]
¡û
>W131231139
AUIF01000012
Bacteroidota
Runella zeae DSM 19591 [AUIF]
69021
69096
+
Val
TAC
[ENA]
¡û
>W131231140
AUIF01000012
Bacteroidota
Runella zeae DSM 19591 [AUIF]
69160
69235
+
Val
TAC
[ENA]
¡û
>w023319
AAXU01000003
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
333279
333358
+
Val
TAC
[ENA]
¡û
>w023318
AAXU01000003
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
333035
333114
+
Val
TAC
[ENA]
¡û
>W141039138
ALWO02000047
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
55166
55091
-
Val
TAC
[ENA]
¡û
>W141039139
ALWO02000047
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
54907
54832
-
Val
TAC
[ENA]
¡û
>W141043712
AMGM01000012
Bacteroidota
Cecembia lonarensis LW9 [AMGM]
2423
2500
+
Val
TAC
[ENA]
¡û
>WENV181120815
OEFK01068948
[OEFK] marine metagenome; ENVO:00002010 seawater
265
190
-
Val
TAC
[ENA]
¢þ
>WENV181369609
OFQP01011744
[OFQP] freshwater metagenome; Freshwater Lake
783
708
-
Val
TAC
[ENA]
¢þ
>W141212169
AZQN01000010
Bacteroidota
Dyadobacter tibetensis Y620-1 [AZQN]
218
141
-
Val
TAC
[ENA]
¡û
>W141242798
CAIT01000009
Bacteroidota
Fibrisoma limi BUZ 3 [CAIT]
842214
842137
-
Val
TAC
[ENA]
¡û
>WENV170623027
FUWD013133462
[FUWD] metagenome; unknown
1248
1173
-
Val
TAC
[ENA]
¢þ
>WENV170631262
FUWD013346541
[FUWD] metagenome; unknown
1248
1173
-
Val
TAC
[ENA]
¢þ
>WENV170641343
JFJP01036956
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
24447
24522
+
Val
TAC
[ENA]
¢þ
>W09108956
ABTS01000009
Bacteroidota
Dyadobacter fermentans DSM 18053 [ABTS]
31893
31816
-
Val
TAC
[ENA]
¡û
>WENV170984477
MWVV01309319
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
111
36
-
Val
TAC
[ENA]
¢þ
>WENV170990508
MWWA01011338
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
1310
1387
+
Val
TAC
[ENA]
¢þ
>C181179076
CP029480
Bacteroidota
Arcticibacterium luteifluviistationis SM1504 [CP029480]
4221120
4221045
-
Val
TAC
-
¡û
>C181187364
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
2342182
2342107
-
Val
TAC
-
¡û
>C181187365
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
2342059
2341984
-
Val
TAC
-
¡û
>C191175211
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
507990
507915
-
Val
TAC
-
¡û
>C191175212
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
507867
507792
-
Val
TAC
-
¡û
>C191189185
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
520473
520398
-
Val
TAC
-
¡û
>C191189187
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
519983
519908
-
Val
TAC
-
¡û
>W141699672
JMIH01000023
Bacteroidota
Anditalea andensis [JMIH]
74167
74242
+
Val
TAC
[ENA]
¡û
>W141699673
JMIH01000023
Bacteroidota
Anditalea andensis [JMIH]
74286
74361
+
Val
TAC
[ENA]
¡û
>W141731402
JNJB01000012
Bacteroidota
Dyadobacter crusticola DSM 16708 [JNJB]
224384
224307
-
Val
TAC
[ENA]
¡û
>W1910548320
FZOK01000015
Bacteroidota
Belliella buryatensis 5C [FZOK]
421
346
-
Val
TAC
[ENA]
¡û
>W1910548321
FZOK01000015
Bacteroidota
Belliella buryatensis 5C [FZOK]
321
246
-
Val
TAC
[ENA]
¡û
>W1910584214
JXSZ01000006
Bacteroidota
Jiulongibacter sediminis JN14-9 [JXSZ]
426722
426647
-
Val
TAC
[ENA]
¡û
>C09103934
CP001619
Bacteroidota
Dyadobacter fermentans DSM 18053 [CP001619]
4876383
4876460
+
Val
TAC
[Ensembl]
¡û
>W1911701530
QNUL01000016
Bacteroidota
Dyadobacter luteus RS19 [QNUL]
58451
58526
+
Val
TAC
[ENA]
¡û
>W1911766802
QXED01000001
Bacteroidota
Fibrisoma montanum HYT19 [QXED]
394649
394574
-
Val
TAC
[ENA]
¡û
>W1810364999
PVTR01000006
Bacteroidota
Mongoliibacter ruber DSM 27929 [PVTR]
150006
149931
-
Val
TAC
[ENA]
¡û
>W1810365000
PVTR01000006
Bacteroidota
Mongoliibacter ruber DSM 27929 [PVTR]
149671
149596
-
Val
TAC
[ENA]
¡û
>W1810392813
PYAS01000002
Bacteroidota
Dyadobacter jiangsuensis DSM 29057 [PYAS]
59843
59918
+
Val
TAC
[ENA]
¡û
>W1810531982
QCXY01000004
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
204577
204502
-
Val
TAC
[ENA]
¡û
>W1810531990
QCXY01000009
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
133561
133486
-
Val
TAC
[ENA]
¡û
>W1810595297
QGDT01000009
Bacteroidota
Dyadobacter jejuensis DSM 100346 [QGDT]
190449
190524
+
Val
TAC
[ENA]
¡û
>W1810686036
QKZT01000011
Bacteroidota
Algoriphagus chordae DSM 19830 [QKZT]
28889
28814
-
Val
TAC
[ENA]
¡û
>W1810686037
QKZT01000011
Bacteroidota
Algoriphagus chordae DSM 19830 [QKZT]
28620
28545
-
Val
TAC
[ENA]
¡û
>W1810686082
QKZU01000025
Bacteroidota
Algoriphagus ratkowskyi DSM 22686 [QKZU]
24564
24489
-
Val
TAC
[ENA]
¡û
>W1810686083
QKZU01000025
Bacteroidota
Algoriphagus ratkowskyi DSM 22686 [QKZU]
24384
24309
-
Val
TAC
[ENA]
¡û
>W1810693489
QLLK01000018
Bacteroidota
Algoriphagus yeomjeoni DSM 23446 [QLLK]
20001
20076
+
Val
TAC
[ENA]
¡û
>W1810693490
QLLK01000018
Bacteroidota
Algoriphagus yeomjeoni DSM 23446 [QLLK]
20119
20194
+
Val
TAC
[ENA]
¡û
>W1810885324
QUNF01000036
Bacteroidota
Algoriphagus antarcticus DSM 15986 [QUNF]
23803
23728
-
Val
TAC
[ENA]
¡û
>W1810885325
QUNF01000036
Bacteroidota
Algoriphagus antarcticus DSM 15986 [QUNF]
23706
23631
-
Val
TAC
[ENA]
¡û
>W1810913036
QVMT01000006
Bacteroidota
Emticicia sp. C21 [QVMT]
198681
198606
-
Val
TAC
[ENA]
¡û
>C151090028
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
2886313
2886238
-
Val
TAC
[Ensembl]
¡û
>C151090029
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
2886049
2885974
-
Val
TAC
[Ensembl]
¡û
>SRA1050779
SRR035096.19629
454 Sequencing (SRP001817)
102
177
+
Val
TAC
[SRA]
>C11105716
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
2862175
2862252
+
Val
TAC
[Ensembl]
¡û
>C11105717
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
2862303
2862380
+
Val
TAC
[Ensembl]
¡û
>C11118894
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
4602846
4602769
-
Val
TAC
[Ensembl]
¡û
>C121010198
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
4176924
4177001
+
Val
TAC
[Ensembl]
¡û
>C121010199
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
4177020
4177097
+
Val
TAC
[Ensembl]
¡û
>C161105012
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
1684838
1684761
-
Val
TAC
[Ensembl]
¡û
>W1610050135
BBFN01000094
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
378
303
-
Val
TAC
[ENA]
¡û
>W1610050136
BBFN01000094
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
167
92
-
Val
TAC
[ENA]
¡û
>W121071526
AJYA01000019
Bacteroidota
Nitritalea halalkaliphila LW7 [AJYA]
62598
62675
+
Val
TAC
[ENA]
¡û
>C131003317
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
596737
596660
-
Val
TAC
[Ensembl]
¡û
>C131003318
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
596611
596536
-
Val
TAC
[Ensembl]
¡û
>W1610617461
LGTQ01000006
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
426722
426645
-
Val
TAC
[ENA]
¡û
>W1610739301
LMPS01000001
Bacteroidota
Dyadobacter sp. Leaf189 [LMPS]
262051
262128
+
Val
TAC
[ENA]
¡û
>W1610747847
LMXN01000017
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
22386
22461
+
Val
TAC
[ENA]
¡û
>W1610747848
LMXN01000017
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
22504
22579
+
Val
TAC
[ENA]
¡û
>W1710046534
BBFN01000094
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
378
303
-
Val
TAC
[ENA]
¡û
>W1710046535
BBFN01000094
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
167
92
-
Val
TAC
[ENA]
¡û
>W1710513949
FNAN01000018
Bacteroidota
Dyadobacter soli [FNAN]
7635
7712
+
Val
TAC
[ENA]
¡û
>W1710532188
FNQC01000004
Bacteroidota
Rhodonellum ikkaensis [FNQC]
113514
113591
+
Val
TAC
[ENA]
¡û
>W1710532189
FNQC01000004
Bacteroidota
Rhodonellum ikkaensis [FNQC]
113639
113716
+
Val
TAC
[ENA]
¡û
>W1710541599
FNYL01000004
Bacteroidota
Dyadobacter sp. SG02 [FNYL]
400019
399942
-
Val
TAC
[ENA]
¡û
>W1710542616
FNZH01000002
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
1103594
1103517
-
Val
TAC
[ENA]
¡û
>W1710556712
FOKK01000019
Bacteroidota
Algoriphagus aquimarinus [FOKK]
9487
9562
+
Val
TAC
[ENA]
¡û
>W1710556713
FOKK01000019
Bacteroidota
Algoriphagus aquimarinus [FOKK]
9607
9682
+
Val
TAC
[ENA]
¡û
>W1710577997
FPBF01000014
Bacteroidota
Algoriphagus locisalis [FPBF]
18303
18228
-
Val
TAC
[ENA]
¡û
>W1710577998
FPBF01000014
Bacteroidota
Algoriphagus locisalis [FPBF]
18185
18110
-
Val
TAC
[ENA]
¡û
>W1710593054
FRCY01000002
Bacteroidota
Cyclobacterium lianum [FRCY]
67474
67551
+
Val
TAC
[ENA]
¡û
>W1710593730
FRXN01000002
Bacteroidota
Algoriphagus zhangzhouensis [FRXN]
61051
60976
-
Val
TAC
[ENA]
¡û
>W1710594221
FSRC01000001
Bacteroidota
Algoriphagus halophilus [FSRC]
22948
22873
-
Val
TAC
[ENA]
¡û
>W1710594222
FSRC01000001
Bacteroidota
Algoriphagus halophilus [FSRC]
22833
22756
-
Val
TAC
[ENA]
¡û
>W1710599292
FTOP01000010
Bacteroidota
Belliella pelovolcani [FTOP]
96077
96002
-
Val
TAC
[ENA]
¡û
>W1710599293
FTOP01000010
Bacteroidota
Belliella pelovolcani [FTOP]
95805
95730
-
Val
TAC
[ENA]
¡û
>W1710603409
FUZA01000008
Bacteroidota
Dyadobacter psychrophilus [FUZA]
208586
208509
-
Val
TAC
[ENA]
¡û
>W1710743048
LGTQ01000006
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
426722
426645
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK