This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156574 (29 seq.)
>W131158400
AQUA01000005
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
96396
96470
+
Met
CAT
[ENA]
¡û
>WENV180111118
OAPN01031127
[OAPN] marine metagenome; 2011
462
538
+
Ile2
CAT
[ENA]
¢þ
>WENV180111591
OAPN01118101
[OAPN] marine metagenome; 2011
201
275
+
Ile2
CAT
[ENA]
¢þ
>WENV181369567
OFQP01008425
[OFQP] freshwater metagenome; Freshwater Lake
434
360
-
Ile2
CAT
[ENA]
¢þ
>WENV181376874
OFRA01000391
[OFRA] wastewater metagenome; Lake Maggiore Verbania
10052
9978
-
Ile2
CAT
[ENA]
¢þ
>WENV181379438
OFRD01001548
[OFRD] wastewater metagenome; Exp Tend CN 100WW
816
890
+
Ile2
CAT
[ENA]
¢þ
>WENV181385118
OFRI01035508
[OFRI] wastewater metagenome; Exp Tend VB 90WW
387
461
+
Ile2
CAT
[ENA]
¢þ
>WENV181385942
OFRL01000180
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
15096
15022
-
Ile2
CAT
[ENA]
¢þ
>WENV181399940
OFSF01000353
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1717
1791
+
Ile2
CAT
[ENA]
¢þ
>WENV181836080
OGVJ01000471
[OGVJ] freshwater metagenome; freshwater
2263
2187
-
Ile2
CAT
[ENA]
¢þ
>WENV181842880
OGVT01035297
[OGVT] freshwater metagenome; freshwater
81
155
+
Ile2
CAT
[ENA]
¢þ
>WENV181843157
OGVU01001664
[OGVU] freshwater metagenome; freshwater
1452
1526
+
Ile2
CAT
[ENA]
¢þ
>WENV181853643
OGWI01027837
[OGWI] freshwater metagenome; freshwater
313
387
+
Ile2
CAT
[ENA]
¢þ
>WENV170572707
FLOH01001190
[FLOH] marine metagenome; water
4946
4872
-
Met
CAT
[ENA]
¢þ
>WENV170602835
FUWD010269605
[FUWD] metagenome; unknown
307
233
-
Met
CAT
[ENA]
¢þ
>WENV170620329
FUWD013029476
[FUWD] metagenome; unknown
1191
1117
-
Met
CAT
[ENA]
¢þ
>WENV170626314
FUWD013219038
[FUWD] metagenome; unknown
1927
1851
-
Met
CAT
[ENA]
¢þ
>WENV170628466
FUWD013247110
[FUWD] metagenome; unknown
1191
1117
-
Met
CAT
[ENA]
¢þ
>C181018656
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
1194217
1194291
+
Met
CAT
-
¡û
>C181020905
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
375080
375006
-
Met
CAT
-
¡û
>C181020979
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
394551
394477
-
Met
CAT
-
¡û
>C181021015
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
363916
363842
-
Met
CAT
-
¡û
>C181021051
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
319202
319128
-
Met
CAT
-
¡û
>C181021088
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
321837
321763
-
Met
CAT
-
¡û
>C181021163
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
365015
364941
-
Met
CAT
-
¡û
>C181021200
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
330559
330485
-
Met
CAT
-
¡û
>C181021313
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
323080
323006
-
Met
CAT
-
¡û
>WENV057738
AACY023304975
Marine microbial communities from Global Ocean Sampling (GOS)
356
280
-
Met
CAT
[ENA]
>WENV059004
AACY023350363
Marine microbial communities from Global Ocean Sampling (GOS)
1020
1096
+
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK