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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156742 (15 seq.)
>WENV181228703
OFEH01001369
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
1692
1766
+
Ile
GAT
[ENA]
¢þ
>WENV181407567
OGCG01042836
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
179
105
-
Ile
GAT
[ENA]
¢þ
>C08005592
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
1252589
1252515
-
Ile
GAT
[Ensembl]
¡û
>C08005599
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
789667
789593
-
Ile
GAT
[Ensembl]
¡û
>W09107143
ABFI01000022
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
16333
16407
+
Ile
GAT
[ENA]
¡û
>C151003663
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
1243734
1243660
-
Ile
GAT
[Ensembl]
¡û
>C151003668
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
775642
775568
-
Ile
GAT
[Ensembl]
¡û
>C151003707
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
1243604
1243530
-
Ile
GAT
[Ensembl]
¡û
>C151003712
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
775697
775623
-
Ile
GAT
[Ensembl]
¡û
>W10115215
ADJO01000021
Aquificota
Hydrogenobaculum sp. SN [ADJO]
3341
3267
-
Ile
GAT
[ENA]
¡û
>W11118801
ADJO01000021
Aquificota
Hydrogenobaculum sp. SN [ADJO]
3341
3267
-
Ile
GAT
[ENA]
¡û
>C133000277
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
1243928
1243854
-
Ile
GAT
[Ensembl]
¡û
>C131013407
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
775670
775596
-
Ile
GAT
[Ensembl]
¡û
>C131013714
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
1243891
1243817
-
Ile
GAT
[Ensembl]
¡û
>C131013719
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
775636
775562
-
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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