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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156748 (9 seq.)
>WENV181228559
OFEH01000198
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
16537
16614
+
Asp
GTC
[ENA]
¢þ
>C08005584
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
1363429
1363506
+
Asp
GTC
[Ensembl]
¡û
>W09107127
ABFI01000007
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
14871
14794
-
Asp
GTC
[ENA]
¡û
>C151003655
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
1353461
1353538
+
Asp
GTC
[Ensembl]
¡û
>C151003699
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
1353330
1353407
+
Asp
GTC
[Ensembl]
¡û
>W10115196
ADJO01000004
Aquificota
Hydrogenobaculum sp. SN [ADJO]
47993
48070
+
Asp
GTC
[ENA]
¡û
>W11118782
ADJO01000004
Aquificota
Hydrogenobaculum sp. SN [ADJO]
47993
48070
+
Asp
GTC
[ENA]
¡û
>C131013395
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
1353655
1353732
+
Asp
GTC
[Ensembl]
¡û
>C131013706
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
1353617
1353694
+
Asp
GTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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