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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157078 (20 seq.)
>WENV180217832
OBAR01005896
[OBAR] human gut metagenome; human gut
1571
1495
-
Arg
TCT
[ENA]
¢þ
>WENV180531594
OCHK01122282
[OCHK] human gut metagenome; human gut
167
91
-
Arg
TCT
[ENA]
¢þ
>WENV180617944
OCQA01097861
[OCQA] human gut metagenome; human gut
281
205
-
Arg
TCT
[ENA]
¢þ
>WENV181478516
OGFF01065047
[OGFF] metagenome; Human gut stool
557
481
-
Arg
TCT
[ENA]
¢þ
>WENV181530829
OGHO01000265
[OGHO] metagenome; Human gut stool
19377
19453
+
Arg
TCT
[ENA]
¢þ
>WENV181718388
OGPT01016542
[OGPT] human gut metagenome; faeces
355
279
-
Arg
TCT
[ENA]
¢þ
>WENV181746454
OGQN01001450
[OGQN] human gut metagenome; faeces
18164
18240
+
Arg
TCT
[ENA]
¢þ
>WENV181749365
OGQO01037084
[OGQO] human gut metagenome; faeces
542
466
-
Arg
TCT
[ENA]
¢þ
>WENV181827208
OGUM01000950
[OGUM] human gut metagenome; faeces
2762
2686
-
Arg
TCT
[ENA]
¢þ
>WENV181887277
OGXL01002781
[OGXL] human gut metagenome; faeces
11076
11152
+
Arg
TCT
[ENA]
¢þ
>WENV181927114
OGYN01002751
[OGYN] human gut metagenome; faeces
1496
1420
-
Arg
TCT
[ENA]
¢þ
>WENV182012174
OHBM01010920
[OHBM] human gut metagenome; faeces
229
153
-
Arg
TCT
[ENA]
¢þ
>WENV182531253
OIWV01061003
[OIWV] human gut metagenome; faeces
540
464
-
Arg
TCT
[ENA]
¢þ
>WENV182968693
OKXB01004150
[OKXB] human gut metagenome; human gut
5765
5841
+
Arg
TCT
[ENA]
¢þ
>WENV183159328
OLOU01002025
[OLOU] human gut metagenome; faeces
1242
1166
-
Arg
TCT
[ENA]
¢þ
>WENV183164638
OLOX01000584
[OLOX] human gut metagenome; faeces
1222
1146
-
Arg
TCT
[ENA]
¢þ
>WENV183234433
OLQV01036957
[OLQV] human gut metagenome; faeces
1229
1153
-
Arg
TCT
[ENA]
¢þ
>WENV183329652
OLWB01000741
[OLWB] human gut metagenome; faeces
13234
13158
-
Arg
TCT
[ENA]
¢þ
>WENV183362831
OLXK01036348
[OLXK] human gut metagenome; feces
1103
1027
-
Arg
TCT
[ENA]
¢þ
>WENV183641971
OQVL01115870
[OQVL] human gut metagenome; human gut
649
573
-
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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