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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157123 (11 seq.)
>W1710947358
LOSK01000001
Gammaproteobacteria
Vibrio harveyi [LOSK]
1406113
1406029
-
Tyr
GTA
[ENA]
¡û
>W131055515
ANBX01000072
Gammaproteobacteria
Vibrio sp. 712i1 [ANBX]
105290
105374
+
Tyr
GTA
[ENA]
¡û
>C171101633
CP019959
Gammaproteobacteria
Vibrio owensii XSBZ03 [CP019959, CP019960]
844536
844620
+
Tyr
GTA
-
¡û
>WENV170779778
LZQR01000567
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
268
184
-
Tyr
GTA
[ENA]
¢þ
>WENV170779779
LZQR01000567
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
85
3
-
Tyr
GTA
[ENA]
¢þ
>C181118582
CP025537
Gammaproteobacteria
Vibrio harveyi 345 [CP025537, CP025538, CP025538]
78838
78922
+
Tyr
GTA
-
¡û
>C181118583
CP025537
Gammaproteobacteria
Vibrio harveyi 345 [CP025537, CP025538, CP025538]
79022
79106
+
Tyr
GTA
-
¡û
>C191062634
CP028943
Gammaproteobacteria
Vibrio sp. dhg [CP028943, CP028944]
975082
974998
-
Tyr
GTA
-
¡û
>C191101519
CP033144
Gammaproteobacteria
Vibrio owensii V180403 [CP033144, CP033145]
2259954
2260038
+
Tyr
GTA
-
¡û
>C191101524
CP033144
Gammaproteobacteria
Vibrio owensii V180403 [CP033144, CP033145]
2260800
2260884
+
Tyr
GTA
-
¡û
>W1610803360
LOSK01000001
Gammaproteobacteria
Vibrio harveyi [LOSK]
1406113
1406029
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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