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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157150 (44 seq.)
>W1710893654
LNEZ01000025
Alphaproteobacteria
Rhizobiales bacterium Ga0077548 [LNEZ]
9126
9049
-
Pro
GGG
[ENA]
¡û
>W1711009514
LQQT01000004
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
349231
349154
-
Pro
GGG
[ENA]
¡û
>W131186378
ARWB01000001
Alphaproteobacteria
Methylopila sp. M107 [ARWB]
1142527
1142450
-
Pro
GGG
[ENA]
¡û
>C171072688
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
1733259
1733182
-
Pro
GGG
-
¡û
>C171115929
CP021112
Alphaproteobacteria
Pseudorhodoplanes sinuspersici RIPI110 [CP021112]
4625700
4625777
+
Pro
GGG
-
¡û
>W131222229
AUBC01000004
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
266120
266043
-
Pro
GGG
[ENA]
¡û
>C004111
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
4618617
4618540
-
Pro
GGG
[Ensembl]
¡û
>W141007565
AGWZ01000001
Alphaproteobacteria
Afipia felis ATCC 53690 [AGWZ]
493977
493900
-
Pro
GGG
[ENA]
¡û
>WENV181166994
OEIU01005884
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3340
3417
+
Pro
GGG
[ENA]
¢þ
>W08007853
ABKN01000001
Alphaproteobacteria
Afipia carboxidovorans OM5 [ABKN]
1796863
1796789
-
Pro
GGG
[ENA]
¡û
>W141214004
AZSJ01000007
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
827309
827232
-
Pro
GGG
[ENA]
¡û
>W141220757
AZYE01000337
Alphaproteobacteria
Microvirga lupini [AZYE]
28342
28419
+
Pro
GGG
[ENA]
¡û
>WENV182409031
OIFG01000545
[OIFG] human gut metagenome; stool
336
413
+
Pro
GGG
[ENA]
¢þ
>W141276736
JAEA01000011
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
156037
156114
+
Pro
GGG
[ENA]
¡û
>WENV182962990
OKWP01000063
[OKWP] human gut metagenome; stool
12778
12701
-
Pro
GGG
[ENA]
¢þ
>WENV182966383
OKWV01003932
[OKWV] human gut metagenome; stool
114
37
-
Pro
GGG
[ENA]
¢þ
>WENV183745337
PJUL01027523
[PJUL] feces metagenome; Chicken feces enriched on filter paper
245
322
+
Pro
GGG
[ENA]
¢þ
>WENV183749692
PPFU01200392
[PPFU] hypolithon metagenome; Antarctic Hypolithon
14
91
+
Pro
GGG
[ENA]
¢þ
>WENV170002545
AGTN01063575
[AGTN] bioreactor metagenome; poplar biomass
165
88
-
Pro
GGG
[ENA]
¢þ
>WENV170552088
CXWJ01038120
[CXWJ] wastewater metagenome; activated sludge
4206
4283
+
Pro
GGG
[ENA]
¢þ
>WENV170709053
LNFM01000084
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
103569
103646
+
Pro
GGG
[ENA]
¢þ
>WENV170711128
LNFM01003666
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12792
12869
+
Pro
GGG
[ENA]
¢þ
>W141821094
JQNH01000001
Alphaproteobacteria
Rhizobiales bacterium YIM 77505 [JQNH]
1781675
1781598
-
Pro
GGG
[ENA]
¡û
>C09108152
CP001196
Alphaproteobacteria
Afipia carboxidovorans OM5 OM5; ATCC 49405 [CP001196]
1796549
1796472
-
Pro
GGG
-
¡û
>W1911653537
QDFX01000022
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
38
115
+
Pro
GGG
[ENA]
¡û
>W1810534733
QDAH01000027
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
69413
69490
+
Pro
GGG
[ENA]
¡û
>W1810658580
QJJK01000003
Alphaproteobacteria
Chelatococcus asaccharovorans DSM 6462 [QJJK]
42081
42004
-
Pro
GGG
[ENA]
¡û
>C151094757
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
3551279
3551202
-
Pro
GGG
-
¡û
>W10110070
ADBQ01000003
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
310827
310750
-
Pro
GGG
[ENA]
¡û
>W10119587
ADVZ01000005
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
159138
159061
-
Pro
GGG
[ENA]
¡û
>C10112191
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
1729876
1729953
+
Pro
GGG
[Ensembl]
¡û
>W11112507
ADBQ01000003
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
310827
310750
-
Pro
GGG
[ENA]
¡û
>W1510741147
CYHC01000019
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
28311
28388
+
Pro
GGG
[ENA]
¡û
>C11116262
CP002821
Alphaproteobacteria
Afipia carboxidovorans OM4 [CP002821]
2329057
2329134
+
Pro
GGG
[Ensembl]
¡û
>W11125853
ADVZ01000005
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
159138
159061
-
Pro
GGG
[ENA]
¡û
>W1511624266
LCYG01000023
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
21729
21652
-
Pro
GGG
[ENA]
¡û
>C121002982
CP002826
Alphaproteobacteria
Afipia carboxidovorans OM5 [CP002826]
2327937
2328014
+
Pro
GGG
-
¡û
>W121110779
ALIQ01000053
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
9960
10037
+
Pro
GGG
[ENA]
¡û
>W121127121
CAFI01000122
Alphaproteobacteria
Bradyrhizobium sp. ORS 375 [CAFI]
14916
14839
-
Pro
GGG
[ENA]
¡û
>C131000809
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
3794215
3794292
+
Pro
GGG
[Ensembl]
¡û
>W1610631781
LIOL01000019
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
28311
28388
+
Pro
GGG
[ENA]
¡û
>W1610753920
LNEZ01000025
Alphaproteobacteria
Rhizobiales bacterium Ga0077548 [LNEZ]
9126
9049
-
Pro
GGG
[ENA]
¡û
>W1610858034
LQQT01000004
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
349231
349154
-
Pro
GGG
[ENA]
¡û
>W1710764666
LIOL01000019
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
28311
28388
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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