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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157156 (78 seq.)
>W131225499
AUDQ01000002
Bacillota
Sporosarcina ureae DSM 2281 [AUDQ]
281055
281130
+
Arg
TCT
[ENA]
¡û
>W1711330248
MBMU01000051
Bacillota
Planococcus faecalis [MBMU]
4204
4277
+
Arg
TCT
[ENA]
¡û
>C171035277
CP015027
Bacillota
Sporosarcina sp. P33 [CP015027]
387187
387112
-
Arg
TCT
-
¡û
>C171035278
CP015027
Bacillota
Sporosarcina sp. P33 [CP015027]
381312
381235
-
Arg
TCT
-
¡û
>C171035518
CP015108
Bacillota
Sporosarcina ureae S204 [CP015108]
541182
541107
-
Arg
TCT
-
¡û
>C171035586
CP015109
Bacillota
Sporosarcina ureae P17a [CP015109]
522024
521949
-
Arg
TCT
-
¡û
>C171036896
CP015207
Bacillota
Sporosarcina ureae P8 [CP015207]
590741
590666
-
Arg
TCT
-
¡û
>C171037747
CP015348
Bacillota
Sporosarcina ureae P32a [CP015348]
481604
481527
-
Arg
TCT
-
¡û
>C171037814
CP015349
Bacillota
Sporosarcina sp. P37 [CP015349]
452250
452175
-
Arg
TCT
-
¡û
>C171037815
CP015349
Bacillota
Sporosarcina sp. P37 [CP015349]
435708
435631
-
Arg
TCT
-
¡û
>WENV180206174
OBAI01000073
[OBAI] human gut metagenome; human gut
91592
91668
+
Arg
TCT
[ENA]
¢þ
>WENV180655885
OCVV010492136
[OCVV] gut metagenome; gut
1997
1921
-
Arg
TCT
[ENA]
¢þ
>WENV180655886
OCVV010492136
[OCVV] gut metagenome; gut
1997
1921
-
Arg
TCT
[ENA]
¢þ
>WENV180668011
OCVV011249487
[OCVV] gut metagenome; gut
7764
7840
+
Arg
TCT
[ENA]
¢þ
>WENV180668012
OCVV011249487
[OCVV] gut metagenome; gut
7764
7840
+
Arg
TCT
[ENA]
¢þ
>WENV180668791
OCVV011267648
[OCVV] gut metagenome; gut
2303
2227
-
Arg
TCT
[ENA]
¢þ
>WENV180668792
OCVV011267648
[OCVV] gut metagenome; gut
2303
2227
-
Arg
TCT
[ENA]
¢þ
>WENV180680109
OCVV012453466
[OCVV] gut metagenome; gut
78
2
-
Arg
TCT
[ENA]
¢þ
>WENV180680110
OCVV012453466
[OCVV] gut metagenome; gut
78
2
-
Arg
TCT
[ENA]
¢þ
>WENV181053631
ODYI01000377
[ODYI] human metagenome; G_DNA_Stool
58581
58505
-
Arg
TCT
[ENA]
¢þ
>WENV181451758
OGDY01014920
[OGDY] metagenome; Human gut stool
1569
1493
-
Arg
TCT
[ENA]
¢þ
>WENV181495117
OGGC01000019
[OGGC] metagenome; Human gut stool
95940
96016
+
Arg
TCT
[ENA]
¢þ
>WENV181606225
OGLM01000061
[OGLM] metagenome; Human gut stool
7090
7014
-
Arg
TCT
[ENA]
¢þ
>WENV181610154
OGLP01001880
[OGLP] metagenome; Human gut stool
1839
1915
+
Arg
TCT
[ENA]
¢þ
>WENV181641235
OGNF01002202
[OGNF] metagenome; Human gut stool
4873
4949
+
Arg
TCT
[ENA]
¢þ
>WENV181655699
OGOB01000599
[OGOB] metagenome; Human gut stool
10280
10356
+
Arg
TCT
[ENA]
¢þ
>WENV181705270
OGPK01004552
[OGPK] human gut metagenome; faeces
4034
3958
-
Arg
TCT
[ENA]
¢þ
>WENV181788891
OGRO01004996
[OGRO] human gut metagenome; faeces
4031
4107
+
Arg
TCT
[ENA]
¢þ
>W141215199
AZUC01000014
Bacillota
Sporosarcina sp. D27 [AZUC]
41946
42021
+
Arg
TCT
[ENA]
¡û
>WENV182524904
OIWT01000812
[OIWT] human gut metagenome; faeces
35998
35922
-
Arg
TCT
[ENA]
¢þ
>WENV182537644
OIXH01012510
[OIXH] human gut metagenome; faeces
3683
3607
-
Arg
TCT
[ENA]
¢þ
>WENV182609422
OJJV01007793
[OJJV] metagenome; faeces
1833
1757
-
Arg
TCT
[ENA]
¢þ
>WENV182620982
OJKI01036680
[OJKI] metagenome; faeces
710
634
-
Arg
TCT
[ENA]
¢þ
>WENV182638727
OJLA01022331
[OJLA] metagenome; faeces
280
204
-
Arg
TCT
[ENA]
¢þ
>WENV182660032
OJMM01000006
[OJMM] human gut metagenome; feces
118710
118786
+
Arg
TCT
[ENA]
¢þ
>WENV182662877
OJMO01000620
[OJMO] human gut metagenome; feces
12937
13013
+
Arg
TCT
[ENA]
¢þ
>WENV182711356
OJPD01027837
[OJPD] human gut metagenome; stool sample
261
185
-
Arg
TCT
[ENA]
¢þ
>WENV183045613
OLGE01017619
[OLGE] human gut metagenome; faeces
494
418
-
Arg
TCT
[ENA]
¢þ
>WENV183131473
OLOA01047860
[OLOA] human gut metagenome; faeces
720
796
+
Arg
TCT
[ENA]
¢þ
>WENV183146494
OLOM01009397
[OLOM] human gut metagenome; faeces
2053
2129
+
Arg
TCT
[ENA]
¢þ
>WENV183328666
OLWA01026122
[OLWA] human gut metagenome; faeces
183
259
+
Arg
TCT
[ENA]
¢þ
>WENV183329803
OLWB01001230
[OLWB] human gut metagenome; faeces
3250
3174
-
Arg
TCT
[ENA]
¢þ
>WENV170040595
CDYS01037835
[CDYS] gut metagenome; human stools
480
404
-
Arg
TCT
[ENA]
¢þ
>WENV170043910
CDYU01052327
[CDYU] gut metagenome; human stools
3019
2943
-
Arg
TCT
[ENA]
¢þ
>WENV170045835
CDYY01008725
[CDYY] gut metagenome; human stools
420
344
-
Arg
TCT
[ENA]
¢þ
>WENV170084073
CEAB01001765
[CEAB] gut metagenome; human stools
5474
5398
-
Arg
TCT
[ENA]
¢þ
>WENV170097095
CEAL01011343
[CEAL] gut metagenome; human stools
91
15
-
Arg
TCT
[ENA]
¢þ
>WENV170097570
CEAL01035585
[CEAL] gut metagenome; human stools
3
79
+
Arg
TCT
[ENA]
¢þ
>WENV170700393
LIDZ01013321
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
50193
50266
+
Arg
TCT
[ENA]
¢þ
>C181197253
CP031230
Bacillota
Sporosarcina sp. PTS2304 [CP031230]
1310034
1309958
-
Arg
TCT
-
¡û
>W1810066841
PDYK01000003
Bacillota
Sporosarcina sp. P10 [PDYK]
53819
53744
-
Arg
TCT
[ENA]
¡û
>W1810066887
PDYL01000003
Bacillota
Sporosarcina sp. P12(2017) [PDYL]
53820
53745
-
Arg
TCT
[ENA]
¡û
>W1810066978
PDYM01000045
Bacillota
Sporosarcina sp. P13 [PDYM]
4859
4934
+
Arg
TCT
[ENA]
¡û
>W1810067000
PDYN01000004
Bacillota
Sporosarcina sp. P16a [PDYN]
103513
103588
+
Arg
TCT
[ENA]
¡û
>W1810067053
PDYO01000004
Bacillota
Sporosarcina sp. P16b [PDYO]
8184
8259
+
Arg
TCT
[ENA]
¡û
>W1810067108
PDYP01000002
Bacillota
Sporosarcina sp. P17b [PDYP]
59898
59822
-
Arg
TCT
[ENA]
¡û
>W1810067167
PDYQ01000001
Bacillota
Sporosarcina sp. P18a [PDYQ]
326595
326670
+
Arg
TCT
[ENA]
¡û
>W1810067212
PDYR01000002
Bacillota
Sporosarcina sp. P19 [PDYR]
191628
191703
+
Arg
TCT
[ENA]
¡û
>W1810067265
PDYS01000003
Bacillota
Sporosarcina sp. P1 [PDYS]
103233
103308
+
Arg
TCT
[ENA]
¡û
>W1810067310
PDYT01000002
Bacillota
Sporosarcina sp. P20a [PDYT]
313204
313129
-
Arg
TCT
[ENA]
¡û
>W1810067365
PDYU01000003
Bacillota
Sporosarcina sp. P21c [PDYU]
103513
103588
+
Arg
TCT
[ENA]
¡û
>W1810067420
PDYV01000004
Bacillota
Sporosarcina sp. P25 [PDYV]
103513
103588
+
Arg
TCT
[ENA]
¡û
>W1810067477
PDYW01000001
Bacillota
Sporosarcina sp. P26b [PDYW]
349919
349995
+
Arg
TCT
[ENA]
¡û
>W1810067520
PDYX01000001
Bacillota
Sporosarcina sp. P29 [PDYX]
60598
60523
-
Arg
TCT
[ENA]
¡û
>W1810067578
PDYY01000001
Bacillota
Sporosarcina sp. P2 [PDYY]
167858
167933
+
Arg
TCT
[ENA]
¡û
>W1810067630
PDYZ01000001
Bacillota
Sporosarcina sp. P30 [PDYZ]
274501
274576
+
Arg
TCT
[ENA]
¡û
>W1810067688
PDZA01000001
Bacillota
Sporosarcina sp. P31 [PDZA]
274570
274645
+
Arg
TCT
[ENA]
¡û
>W1810067746
PDZB01000003
Bacillota
Sporosarcina sp. P32b [PDZB]
168943
169018
+
Arg
TCT
[ENA]
¡û
>W1810067818
PDZC01000003
Bacillota
Sporosarcina sp. P34 [PDZC]
241782
241857
+
Arg
TCT
[ENA]
¡û
>W1810067857
PDZD01000006
Bacillota
Sporosarcina sp. P35 [PDZD]
9743
9819
+
Arg
TCT
[ENA]
¡û
>W1810067862
PDZD01000029
Bacillota
Sporosarcina sp. P35 [PDZD]
1462
1387
-
Arg
TCT
[ENA]
¡û
>W1810067918
PDZE01000006
Bacillota
Sporosarcina sp. P3 [PDZE]
164378
164303
-
Arg
TCT
[ENA]
¡û
>W1810067971
PDZF01000005
Bacillota
Sporosarcina sp. P7 [PDZF]
164587
164662
+
Arg
TCT
[ENA]
¡û
>W1810591522
QFVR01000004
Bacillota
Kurthia sibirica ATCC 49154 [QFVR]
46708
46633
-
Arg
TCT
[ENA]
¡û
>W1810762661
QQAK01000013
Bacillota
Sporosarcina sp. BI001-red [QQAK]
294607
294682
+
Arg
TCT
[ENA]
¡û
>W1511479284
JWIB01000019
Bacillota
Sporosarcina sp. ZBG7A [JWIB]
100765
100690
-
Arg
TCT
[ENA]
¡û
>W1710597761
FTNK01000003
Bacillota
Paenibacillus macquariensis [FTNK]
480308
480385
+
Arg
TCT
[ENA]
¡û
>W1710597762
FTNK01000003
Bacillota
Paenibacillus macquariensis [FTNK]
492671
492598
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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