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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157193 (52 seq.)
>WENV180629652
OCQP01161269
[OCQP] human gut metagenome; human gut
121
197
+
Ile
GAT
[ENA]
¢þ
>WENV180704393
ODEI01059812
[ODEI] human metagenome; G_DNA_Stool
153
77
-
Ile
GAT
[ENA]
¢þ
>WENV180851240
ODKV01040020
[ODKV] human metagenome; G_DNA_Stool
312
388
+
Ile
GAT
[ENA]
¢þ
>WENV180972045
ODUU01191475
[ODUU] human metagenome; G_DNA_Stool
268
192
-
Ile
GAT
[ENA]
¢þ
>WENV181149612
OEHT01141722
[OEHT] human metagenome; G_DNA_Stool
93
17
-
Ile
GAT
[ENA]
¢þ
>WENV181492653
OGFY01038312
[OGFY] metagenome; Human gut stool
74
150
+
Ile
GAT
[ENA]
¢þ
>WENV181772935
OGRD01038751
[OGRD] human gut metagenome; faeces
223
299
+
Ile
GAT
[ENA]
¢þ
>WENV181789909
OGRO01057339
[OGRO] human gut metagenome; faeces
48
124
+
Ile
GAT
[ENA]
¢þ
>WENV181803857
OGSD01080027
[OGSD] human gut metagenome; faeces
118
194
+
Ile
GAT
[ENA]
¢þ
>WENV181913010
OGYE01002258
[OGYE] human gut metagenome; faeces
1781
1705
-
Ile
GAT
[ENA]
¢þ
>WENV182296972
OHWG01053831
[OHWG] human gut metagenome; feces
31
107
+
Ile
GAT
[ENA]
¢þ
>WENV182514588
OIWM01014619
[OIWM] human gut metagenome; faeces
2167
2091
-
Ile
GAT
[ENA]
¢þ
>WENV182533600
OIXA01037645
[OIXA] human gut metagenome; faeces
1417
1341
-
Ile
GAT
[ENA]
¢þ
>WENV182538278
OIXH01064415
[OIXH] human gut metagenome; faeces
816
740
-
Ile
GAT
[ENA]
¢þ
>WENV182634400
OJKY01009540
[OJKY] metagenome; faeces
1193
1269
+
Ile
GAT
[ENA]
¢þ
>WENV182666901
OJNH01104387
[OJNH] human gut metagenome; feces
47
123
+
Ile
GAT
[ENA]
¢þ
>WENV182713016
OJPF01025894
[OJPF] human gut metagenome; stool sample
610
534
-
Ile
GAT
[ENA]
¢þ
>WENV182741406
OJQM01028412
[OJQM] human gut metagenome; stool sample
816
740
-
Ile
GAT
[ENA]
¢þ
>WENV183040030
OLGB01034615
[OLGB] human gut metagenome; faeces
1142
1066
-
Ile
GAT
[ENA]
¢þ
>WENV183043358
OLGD01047363
[OLGD] human gut metagenome; faeces
879
803
-
Ile
GAT
[ENA]
¢þ
>WENV183085767
OLJF01010679
[OLJF] metagenome; faeces
2356
2280
-
Ile
GAT
[ENA]
¢þ
>WENV183099943
OLNF01026692
[OLNF] human gut metagenome; faeces
1135
1059
-
Ile
GAT
[ENA]
¢þ
>WENV183111766
OLNO01056425
[OLNO] human gut metagenome; faeces
524
448
-
Ile
GAT
[ENA]
¢þ
>WENV183221830
OLQL01036022
[OLQL] human gut metagenome; faeces
723
647
-
Ile
GAT
[ENA]
¢þ
>WENV183253282
OLRI01045149
[OLRI] human gut metagenome; faeces
861
785
-
Ile
GAT
[ENA]
¢þ
>WENV183294658
OLSK01050079
[OLSK] human gut metagenome; faeces
522
446
-
Ile
GAT
[ENA]
¢þ
>WENV183328722
OLWA01031916
[OLWA] human gut metagenome; faeces
1144
1068
-
Ile
GAT
[ENA]
¢þ
>WENV183520631
OMNT01035180
[OMNT] human gut metagenome; faeces
1048
972
-
Ile
GAT
[ENA]
¢þ
>WENV183779786
PPYF01152989
[PPYF] human gut metagenome; stool from patient with Crohn's disease
774
850
+
Ile
GAT
[ENA]
¢þ
>WENV170008060
AMZC01000855
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
168
92
-
Ile
GAT
[ENA]
¢þ
>WENV170042620
CDYU01012986
[CDYU] gut metagenome; human stools
293
369
+
Ile
GAT
[ENA]
¢þ
>C181115548
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
453675
453751
+
Ile
GAT
-
¡û
>C181115562
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
2984478
2984402
-
Ile
GAT
-
¡û
>C181115572
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
2303669
2303593
-
Ile
GAT
-
¡û
>C191031551
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
453667
453743
+
Ile
GAT
-
¡û
>C191031565
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
2949593
2949517
-
Ile
GAT
-
¡û
>C191031575
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
2268796
2268720
-
Ile
GAT
-
¡û
>C191031606
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
453669
453745
+
Ile
GAT
-
¡û
>C191031620
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
3075086
3075010
-
Ile
GAT
-
¡û
>C191031630
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
2391837
2391761
-
Ile
GAT
-
¡û
>C191072217
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
453675
453751
+
Ile
GAT
-
¡û
>C191072231
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
2984475
2984399
-
Ile
GAT
-
¡û
>C191072241
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
2303665
2303589
-
Ile
GAT
-
¡û
>C151102728
LM995447
Bacillota
[Clostridium] cellulosi [LM995447]
116491
116567
+
Ile
GAT
[Ensembl]
¡û
>C151102732
LM995447
Bacillota
[Clostridium] cellulosi [LM995447]
550979
551055
+
Ile
GAT
[Ensembl]
¡û
>C151102737
LM995447
Bacillota
[Clostridium] cellulosi [LM995447]
971307
971383
+
Ile
GAT
[Ensembl]
¡û
>C151102740
LM995447
Bacillota
[Clostridium] cellulosi [LM995447]
2203624
2203548
-
Ile
GAT
[Ensembl]
¡û
>W10115312
ADJQ01000048
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
2582
2658
+
Ile
GAT
[ENA]
¡û
>C11108744
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
453660
453736
+
Ile
GAT
[Ensembl]
¡û
>C11108758
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
2983869
2983793
-
Ile
GAT
[Ensembl]
¡û
>C11108768
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
2303669
2303593
-
Ile
GAT
[Ensembl]
¡û
>W11118898
ADJQ01000048
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
2582
2658
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK