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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157280 (51 seq.)
>W131158388
AQUA01000002
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
111563
111487
-
Phe
GAA
[ENA]
¡û
>W131183100
ARRO01000001
Actinomycetota
actinobacterium SCGC AAA027-M14 [ARRO]
70947
70871
-
Phe
GAA
[ENA]
¡û
>WENV016720
AACY020468813
Marine microbial communities from Global Ocean Sampling (GOS)
2904
2982
+
Phe
GAA
[ENA]
>WENV180111249
OAPN01046289
[OAPN] marine metagenome; 2011
409
335
-
Phe
GAA
[ENA]
¢þ
>WENV180377485
OBON01030067
[OBON] marine metagenome; sea water
191
265
+
Phe
GAA
[ENA]
¢þ
>WENV181369086
OFQN01022459
[OFQN] freshwater metagenome; Freshwater Lake
454
380
-
Phe
GAA
[ENA]
¢þ
>WENV181370305
OFQS01002740
[OFQS] freshwater metagenome; Freshwater Lake
993
1067
+
Phe
GAA
[ENA]
¢þ
>W141170883
AXZA01000019
Actinomycetota
actinobacterium SCGC AAA044-D11 [AXZA]
110873
110799
-
Phe
GAA
[ENA]
¡û
>WENV181836025
OGVJ01000089
[OGVJ] freshwater metagenome; freshwater
442
516
+
Phe
GAA
[ENA]
¢þ
>WENV181836941
OGVJ01051892
[OGVJ] freshwater metagenome; freshwater
422
348
-
Phe
GAA
[ENA]
¢þ
>WENV181838558
OGVN01003573
[OGVN] freshwater metagenome; freshwater
1686
1760
+
Phe
GAA
[ENA]
¢þ
>WENV181843300
OGVU01007349
[OGVU] freshwater metagenome; freshwater
860
786
-
Phe
GAA
[ENA]
¢þ
>WENV181853260
OGWI01001030
[OGWI] freshwater metagenome; freshwater
1215
1141
-
Phe
GAA
[ENA]
¢þ
>WENV181855807
OGWM01002040
[OGWM] freshwater metagenome; freshwater
1376
1302
-
Phe
GAA
[ENA]
¢þ
>WENV170570419
FLOH01000004
[FLOH] marine metagenome; water
665913
665987
+
Phe
GAA
[ENA]
¢þ
>WENV170601540
FUWD010178695
[FUWD] metagenome; unknown
333
259
-
Phe
GAA
[ENA]
¢þ
>WENV170604289
FUWD010382816
[FUWD] metagenome; unknown
340
266
-
Phe
GAA
[ENA]
¢þ
>WENV170605997
FUWD010582927
[FUWD] metagenome; unknown
259
183
-
Phe
GAA
[ENA]
¢þ
>WENV170609681
FUWD011467302
[FUWD] metagenome; unknown
183
107
-
Phe
GAA
[ENA]
¢þ
>WENV170625446
FUWD013197667
[FUWD] metagenome; unknown
3262
3186
-
Phe
GAA
[ENA]
¢þ
>WENV170633686
FUWD013400194
[FUWD] metagenome; unknown
3262
3186
-
Phe
GAA
[ENA]
¢þ
>WENV170645512
JNSK01000037
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
29165
29091
-
Phe
GAA
[ENA]
¢þ
>WENV170645544
JNSK01000093
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1623
1697
+
Phe
GAA
[ENA]
¢þ
>WENV170645552
JNSK01000125
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
13954
13880
-
Phe
GAA
[ENA]
¢þ
>WENV170645577
JNSK01000197
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
3187
3261
+
Phe
GAA
[ENA]
¢þ
>C181018676
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
337466
337392
-
Phe
GAA
-
¡û
>C181018710
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
379979
379905
-
Phe
GAA
-
¡û
>C181020855
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
1338198
1338272
+
Phe
GAA
-
¡û
>C181020892
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
1222440
1222514
+
Phe
GAA
-
¡û
>C181020966
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1229539
1229613
+
Phe
GAA
-
¡û
>C181021002
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
1216545
1216619
+
Phe
GAA
-
¡û
>C181021038
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
1192181
1192255
+
Phe
GAA
-
¡û
>C181021076
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
1185541
1185615
+
Phe
GAA
-
¡û
>C181021150
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
1205155
1205229
+
Phe
GAA
-
¡û
>C181021186
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
1187833
1187907
+
Phe
GAA
-
¡û
>C181021264
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
1262889
1262963
+
Phe
GAA
-
¡û
>C181021300
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
1131224
1131298
+
Phe
GAA
-
¡û
>C181021377
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
1286413
1286487
+
Phe
GAA
-
¡û
>WENV040384
AACY022080096
Marine microbial communities from Global Ocean Sampling (GOS)
358
280
-
Phe
GAA
[ENA]
>WENV046321
AACY022588368
Marine microbial communities from Global Ocean Sampling (GOS)
797
719
-
Phe
GAA
[ENA]
>WENV047178
AACY022644540
Marine microbial communities from Global Ocean Sampling (GOS)
183
105
-
Phe
GAA
[ENA]
>WENV057366
AACY023292596
Marine microbial communities from Global Ocean Sampling (GOS)
724
802
+
Phe
GAA
[ENA]
>WENV057408
AACY023293847
Marine microbial communities from Global Ocean Sampling (GOS)
640
718
+
Phe
GAA
[ENA]
>WENV057645
AACY023301148
Marine microbial communities from Global Ocean Sampling (GOS)
720
798
+
Phe
GAA
[ENA]
>WENV057718
AACY023304413
Marine microbial communities from Global Ocean Sampling (GOS)
941
863
-
Phe
GAA
[ENA]
>WENV057766
AACY023305882
Marine microbial communities from Global Ocean Sampling (GOS)
1033
955
-
Phe
GAA
[ENA]
>WENV058213
AACY023321270
Marine microbial communities from Global Ocean Sampling (GOS)
1536
1458
-
Phe
GAA
[ENA]
>WENV058285
AACY023323338
Marine microbial communities from Global Ocean Sampling (GOS)
243
321
+
Phe
GAA
[ENA]
>WENV058754
AACY023340212
Marine microbial communities from Global Ocean Sampling (GOS)
848
926
+
Phe
GAA
[ENA]
>WENV059002
AACY023350283
Marine microbial communities from Global Ocean Sampling (GOS)
1145
1223
+
Phe
GAA
[ENA]
>WENV006156
AACY020169323
Marine microbial communities from Global Ocean Sampling (GOS)
394
470
+
Phe
GAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK