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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157507 (69 seq.)
>W131204930
ATCI01000019
Bacteroidota
Capnocytophaga sp. oral taxon 336 oral taxon 336 str. F0502 [ATCI]
62489
62412
-
Val
TAC
[ENA]
¡û
>W141042817
AMEV01000094
Bacteroidota
Capnocytophaga sp. oral taxon 324 oral taxon 324 str. F0483 [AMEV]
10374
10451
+
Val
TAC
[ENA]
¡û
>WENV180727439
ODGU01005473
[ODGU] human metagenome; G_DNA_Supragingival plaque
6439
6362
-
Val
TAC
[ENA]
¢þ
>WENV180727572
ODGU01007970
[ODGU] human metagenome; G_DNA_Supragingival plaque
93
168
+
Val
TAC
[ENA]
¢þ
>WENV180732356
ODGY01000223
[ODGY] human metagenome; G_DNA_Supragingival plaque
28262
28187
-
Val
TAC
[ENA]
¢þ
>WENV180750762
ODHS01007514
[ODHS] human metagenome; G_DNA_Supragingival plaque
94
169
+
Val
TAC
[ENA]
¢þ
>WENV180751678
ODHS01106158
[ODHS] human metagenome; G_DNA_Supragingival plaque
329
254
-
Val
TAC
[ENA]
¢þ
>WENV180759673
ODHY01074542
[ODHY] human metagenome; G_DNA_Buccal mucosa
79
154
+
Val
TAC
[ENA]
¢þ
>WENV180768433
ODIG01006913
[ODIG] human metagenome; G_DNA_Tongue dorsum
4586
4511
-
Val
TAC
[ENA]
¢þ
>WENV180795525
ODJB01000022
[ODJB] human metagenome; G_DNA_Supragingival plaque
140444
140369
-
Val
TAC
[ENA]
¢þ
>WENV180796590
ODJB01007629
[ODJB] human metagenome; G_DNA_Supragingival plaque
228
303
+
Val
TAC
[ENA]
¢þ
>WENV180800702
ODJD01000513
[ODJD] human metagenome; G_DNA_Supragingival plaque
17892
17817
-
Val
TAC
[ENA]
¢þ
>WENV180801423
ODJD01030486
[ODJD] human metagenome; G_DNA_Supragingival plaque
92
167
+
Val
TAC
[ENA]
¢þ
>WENV180804095
ODJG01000510
[ODJG] human metagenome; G_DNA_Supragingival plaque
23805
23730
-
Val
TAC
[ENA]
¢þ
>WENV180813928
ODJO01003896
[ODJO] human metagenome; G_DNA_Supragingival plaque
7526
7451
-
Val
TAC
[ENA]
¢þ
>WENV180831906
ODKC01000219
[ODKC] human metagenome; G_DNA_Supragingival plaque
93
168
+
Val
TAC
[ENA]
¢þ
>WENV180832822
ODKC01005151
[ODKC] human metagenome; G_DNA_Supragingival plaque
96
171
+
Val
TAC
[ENA]
¢þ
>WENV180834870
ODKE01000061
[ODKE] human metagenome; G_DNA_Supragingival plaque
58167
58092
-
Val
TAC
[ENA]
¢þ
>WENV180834958
ODKE01000222
[ODKE] human metagenome; G_DNA_Supragingival plaque
90
165
+
Val
TAC
[ENA]
¢þ
>WENV180843692
ODKN01008103
[ODKN] human metagenome; G_DNA_Supragingival plaque
3068
2993
-
Val
TAC
[ENA]
¢þ
>WENV180860046
ODLD01013892
[ODLD] human metagenome; G_DNA_Supragingival plaque
1958
1883
-
Val
TAC
[ENA]
¢þ
>WENV180921996
ODTJ01000969
[ODTJ] human metagenome; G_DNA_Supragingival plaque
92
167
+
Val
TAC
[ENA]
¢þ
>WENV180922596
ODTJ01006489
[ODTJ] human metagenome; G_DNA_Supragingival plaque
92
167
+
Val
TAC
[ENA]
¢þ
>WENV180927982
ODTM01009106
[ODTM] human metagenome; G_DNA_Supragingival plaque
92
167
+
Val
TAC
[ENA]
¢þ
>WENV180928407
ODTM01045767
[ODTM] human metagenome; G_DNA_Supragingival plaque
92
167
+
Val
TAC
[ENA]
¢þ
>WENV180931243
ODTP01002266
[ODTP] human metagenome; G_DNA_Tongue dorsum
11142
11067
-
Val
TAC
[ENA]
¢þ
>WENV180938134
ODTX01000713
[ODTX] human metagenome; G_DNA_Supragingival plaque
23805
23730
-
Val
TAC
[ENA]
¢þ
>WENV180943963
ODUC01005261
[ODUC] human metagenome; G_DNA_Supragingival plaque
5855
5778
-
Val
TAC
[ENA]
¢þ
>WENV180944530
ODUC01021141
[ODUC] human metagenome; G_DNA_Supragingival plaque
96
171
+
Val
TAC
[ENA]
¢þ
>WENV180955105
ODUJ01033320
[ODUJ] human metagenome; G_DNA_Tongue dorsum
231
306
+
Val
TAC
[ENA]
¢þ
>WENV180958005
ODUL01000115
[ODUL] human metagenome; G_DNA_Supragingival plaque
166
91
-
Val
TAC
[ENA]
¢þ
>WENV180964203
ODUO01000522
[ODUO] human metagenome; G_DNA_Supragingival plaque
20624
20549
-
Val
TAC
[ENA]
¢þ
>WENV180980758
ODVE01001696
[ODVE] human metagenome; G_DNA_Supragingival plaque
94
169
+
Val
TAC
[ENA]
¢þ
>WENV180980969
ODVE01004328
[ODVE] human metagenome; G_DNA_Supragingival plaque
93
168
+
Val
TAC
[ENA]
¢þ
>WENV180984166
ODVF01134886
[ODVF] human metagenome; G_DNA_Supragingival plaque
93
168
+
Val
TAC
[ENA]
¢þ
>WENV180990709
ODVN01003767
[ODVN] human metagenome; G_DNA_Tongue dorsum
6096
6021
-
Val
TAC
[ENA]
¢þ
>WENV180990911
ODVN01008516
[ODVN] human metagenome; G_DNA_Tongue dorsum
2763
2688
-
Val
TAC
[ENA]
¢þ
>WENV181003261
ODVX01007682
[ODVX] human metagenome; G_DNA_Supragingival plaque
4031
3956
-
Val
TAC
[ENA]
¢þ
>WENV181005953
ODWA01000249
[ODWA] human metagenome; G_DNA_Buccal mucosa
21482
21407
-
Val
TAC
[ENA]
¢þ
>WENV181052922
ODYG01089285
[ODYG] human metagenome; G_DNA_Tongue dorsum
149
74
-
Val
TAC
[ENA]
¢þ
>WENV181059718
ODYM01007305
[ODYM] human metagenome; G_DNA_Tongue dorsum
2108
2033
-
Val
TAC
[ENA]
¢þ
>WENV181067791
ODZI01054623
[ODZI] human metagenome; G_DNA_Supragingival plaque
93
168
+
Val
TAC
[ENA]
¢þ
>WENV181069827
OEAE01000006
[OEAE] human metagenome; G_DNA_Supragingival plaque
92
167
+
Val
TAC
[ENA]
¢þ
>WENV181075204
OEAO01084772
[OEAO] human metagenome; G_DNA_Tongue dorsum
41
116
+
Val
TAC
[ENA]
¢þ
>WENV181076270
OEAP01003151
[OEAP] human metagenome; G_DNA_Supragingival plaque
8368
8293
-
Val
TAC
[ENA]
¢þ
>WENV181076449
OEAP01005563
[OEAP] human metagenome; G_DNA_Supragingival plaque
94
169
+
Val
TAC
[ENA]
¢þ
>WENV181107700
OEEI01017441
[OEEI] human metagenome; G_DNA_Supragingival plaque
108
183
+
Val
TAC
[ENA]
¢þ
>WENV181121635
OEFL01011591
[OEFL] human metagenome; G_DNA_Supragingival plaque
2110
2035
-
Val
TAC
[ENA]
¢þ
>WENV181146498
OEHQ01007280
[OEHQ] human metagenome; G_DNA_Supragingival plaque
2405
2480
+
Val
TAC
[ENA]
¢þ
>WENV181177281
OEJS01000409
[OEJS] human metagenome; G_DNA_Supragingival plaque
94
169
+
Val
TAC
[ENA]
¢þ
>WENV181180687
OEJU01000624
[OEJU] human metagenome; G_DNA_Supragingival plaque
93
168
+
Val
TAC
[ENA]
¢þ
>WENV181182256
OEJV01004495
[OEJV] human metagenome; G_DNA_Supragingival plaque
1170
1245
+
Val
TAC
[ENA]
¢þ
>WENV182640208
OJLB01000759
[OJLB] metagenome; surface
100
175
+
Val
TAC
[ENA]
¢þ
>W09108460
ABTH01000004
Bacteroidota
Capnocytophaga ochracea DSM 7271 [ABTH]
139402
139479
+
Val
TAC
[ENA]
¡û
>W09114683
ABZV01000003
Bacteroidota
Capnocytophaga sputigena Capno [ABZV]
46752
46675
-
Val
TAC
[ENA]
¡û
>C181055645
CP022022
Bacteroidota
Capnocytophaga endodontalis ChDC OS43 [CP022022]
1948187
1948112
-
Val
TAC
-
¡û
>C181063552
CP022379
Bacteroidota
Capnocytophaga sputigena D1179 [CP022379]
50876
50801
-
Val
TAC
-
¡û
>C181063732
CP022383
Bacteroidota
Capnocytophaga sputigena H4486 [CP022383]
57203
57128
-
Val
TAC
-
¡û
>C181063778
CP022384
Bacteroidota
Capnocytophaga leadbetteri H6253 [CP022384]
337120
337045
-
Val
TAC
-
¡û
>C181063825
CP022385
Bacteroidota
Capnocytophaga sputigena KC1668 [CP022385]
61043
60968
-
Val
TAC
-
¡û
>C181148022
CP027229
Bacteroidota
Capnocytophaga sp. oral taxon 878 F0545 [CP027229]
1069923
1069848
-
Val
TAC
-
¡û
>C181148130
CP027232
Bacteroidota
Capnocytophaga sp. oral taxon 864 F0512 [CP027232]
475326
475251
-
Val
TAC
-
¡û
>C191212298
LR134489
Bacteroidota
Capnocytophaga sputigena NCTC11097 [LR134489]
50876
50801
-
Val
TAC
-
¡û
>W1910919097
NIBW01000002
Bacteroidota
Capnocytophaga sputigena H6490 [NIBW]
563214
563139
-
Val
TAC
[ENA]
¡û
>W1810503602
QBKG01000011
Bacteroidota
Capnocytophaga leadbetteri DSM 22902 [QBKG]
24199
24124
-
Val
TAC
[ENA]
¡û
>C151095869
CP012589
Bacteroidota
Capnocytophaga sp. oral taxon 323 F0383 [CP012589]
545229
545306
+
Val
TAC
-
¡û
>C10103690
CP001632
Bacteroidota
Capnocytophaga ochracea DSM 7271 [CP001632]
2370306
2370383
+
Val
TAC
[Ensembl]
¡û
>W11141868
AEOH01000015
Bacteroidota
Capnocytophaga ochracea F0287 [AEOH]
37648
37725
+
Val
TAC
[ENA]
¡û
>W11163208
AFHP01000104
Bacteroidota
Capnocytophaga sp. oral taxon 329 oral taxon 329 str. F0087 [AFHP]
23654
23577
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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