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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157575 (19 seq.)
>W1710798357
LJTJ01000007
Thermodesulfobacteriota
Desulfobacterales bacterium SG8_35 [LJTJ]
196
111
-
Ser
TGA
[ENA]
¡û
>W1711414420
MGZL01000083
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_58_44 [MGZL]
5844
5929
+
Ser
TGA
[ENA]
¡û
>W1711662174
MQUF01000001
Thermodesulfobacteriota
Desulfobulbaceae bacterium DB1 [MQUF]
110936
110851
-
Ser
TGA
[ENA]
¡û
>W131228725
AUGE01000012
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
64746
64661
-
Ser
TGA
[ENA]
¡û
>C010225
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
348560
348645
+
Ser
TGA
[Ensembl]
¡û
>w024798
AAZA01000024
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
52823
52736
-
Ser
TGA
[ENA]
¡û
>w018114
AASH01000046
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
20032
20119
+
Ser
TGA
[ENA]
¡û
>WENV180582428
OCMO01091616
[OCMO] metagenome; diffuse fluid
132
47
-
Ser
TGA
[ENA]
¢þ
>W08010657
ABRF01000014
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
22578
22663
+
Ser
TGA
[ENA]
¡û
>C08005172
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
131340
131425
+
Ser
TGA
[Ensembl]
¡û
>WENV170006811
AMWB02053767
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1228
1143
-
Ser
TGA
[ENA]
¢þ
>W09133610
ACPJ01000004
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
147246
147161
-
Ser
TGA
[ENA]
¡û
>C09106342
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
1301890
1301975
+
Ser
TGA
[Ensembl]
¡û
>C09106385
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
113426
113511
+
Ser
TGA
[Ensembl]
¡û
>C11109549
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
116183
116268
+
Ser
TGA
[Ensembl]
¡û
>W1610046449
BBCJ01000033
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
48225
48140
-
Ser
TGA
[ENA]
¡û
>W1610662314
LJTJ01000007
Thermodesulfobacteriota
Desulfobacterales bacterium SG8_35 [LJTJ]
196
111
-
Ser
TGA
[ENA]
¡û
>W1710043245
BBCJ01000033
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
48225
48140
-
Ser
TGA
[ENA]
¡û
>W1710087172
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
3401537
3401452
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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