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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157585 (60 seq.)
>WENV180654758
OCVV010359727
[OCVV] gut metagenome; gut
1959
2035
+
Pro
TGG
[ENA]
¢þ
>WENV180654760
OCVV010359727
[OCVV] gut metagenome; gut
1959
2035
+
Pro
TGG
[ENA]
¢þ
>WENV180660177
OCVV010911037
[OCVV] gut metagenome; gut
197
273
+
Pro
TGG
[ENA]
¢þ
>WENV180660178
OCVV010911037
[OCVV] gut metagenome; gut
197
273
+
Pro
TGG
[ENA]
¢þ
>WENV180668940
OCVV011269262
[OCVV] gut metagenome; gut
760
836
+
Pro
TGG
[ENA]
¢þ
>WENV180668942
OCVV011269262
[OCVV] gut metagenome; gut
760
836
+
Pro
TGG
[ENA]
¢þ
>WENV180682048
OCVV012822937
[OCVV] gut metagenome; gut
7519
7595
+
Pro
TGG
[ENA]
¢þ
>WENV180682052
OCVV012822937
[OCVV] gut metagenome; gut
7519
7595
+
Pro
TGG
[ENA]
¢þ
>WENV180812034
ODJN01002401
[ODJN] human metagenome; G_DNA_Stool
4692
4768
+
Pro
TGG
[ENA]
¢þ
>WENV180969161
ODUU01000028
[ODUU] human metagenome; G_DNA_Stool
166931
166855
-
Pro
TGG
[ENA]
¢þ
>WENV181686258
OGOW01008312
[OGOW] human gut metagenome; faeces
4716
4792
+
Pro
TGG
[ENA]
¢þ
>WENV181706385
OGPL01000566
[OGPL] human gut metagenome; faeces
6583
6507
-
Pro
TGG
[ENA]
¢þ
>WENV181718259
OGPT01011630
[OGPT] human gut metagenome; faeces
778
854
+
Pro
TGG
[ENA]
¢þ
>WENV181783051
OGRL01000548
[OGRL] human gut metagenome; faeces
22563
22487
-
Pro
TGG
[ENA]
¢þ
>WENV182019025
OHBX01022717
[OHBX] human gut metagenome; feces
344
268
-
Pro
TGG
[ENA]
¢þ
>WENV182059922
OHER01009585
[OHER] human gut metagenome; feces
464
540
+
Pro
TGG
[ENA]
¢þ
>WENV182062155
OHEU01021925
[OHEU] human gut metagenome; feces
518
594
+
Pro
TGG
[ENA]
¢þ
>WENV182063058
OHEV01024441
[OHEV] human gut metagenome; feces
452
528
+
Pro
TGG
[ENA]
¢þ
>WENV182079774
OHGG01016011
[OHGG] human gut metagenome; feces
495
419
-
Pro
TGG
[ENA]
¢þ
>WENV182150484
OHLI01003267
[OHLI] human gut metagenome; feces
3467
3543
+
Pro
TGG
[ENA]
¢þ
>WENV182189695
OHOO01034124
[OHOO] human gut metagenome; feces
202
126
-
Pro
TGG
[ENA]
¢þ
>WENV182248474
OHSO01043688
[OHSO] human gut metagenome; feces
105
30
-
Pro
TGG
[ENA]
¢þ
>WENV182632140
OJKW01046210
[OJKW] metagenome; faeces
562
638
+
Pro
TGG
[ENA]
¢þ
>WENV182662696
OJMO01000150
[OJMO] human gut metagenome; feces
12678
12602
-
Pro
TGG
[ENA]
¢þ
>WENV182900815
OKSU01009024
[OKSU] human gut metagenome; feces
315
391
+
Pro
TGG
[ENA]
¢þ
>WENV183068526
OLIQ01011578
[OLIQ] metagenome; faeces
1718
1794
+
Pro
TGG
[ENA]
¢þ
>WENV183130479
OLOA01002366
[OLOA] human gut metagenome; faeces
16056
15980
-
Pro
TGG
[ENA]
¢þ
>WENV183165415
OLOX01005171
[OLOX] human gut metagenome; faeces
6429
6505
+
Pro
TGG
[ENA]
¢þ
>WENV170574137
FLYM01008595
[FLYM] hot springs metagenome; Sediment
348
272
-
Pro
TGG
[ENA]
¢þ
>C191002794
AP018524
Bacillota
Melissococcus plutonius DAT585 [AP018524]
297880
297953
+
Pro
TGG
-
¡û
>C191002813
AP018524
Bacillota
Melissococcus plutonius DAT585 [AP018524]
1850102
1850029
-
Pro
TGG
-
¡û
>C191056107
CP028083
Bacillota
Lysinibacillus sp. SGAir0095 [CP028083]
129142
129218
+
Pro
TGG
-
¡û
>C191056116
CP028083
Bacillota
Lysinibacillus sp. SGAir0095 [CP028083]
268776
268852
+
Pro
TGG
-
¡û
>C191056165
CP028083
Bacillota
Lysinibacillus sp. SGAir0095 [CP028083]
2965293
2965217
-
Pro
TGG
-
¡û
>W1911118392
NOKQ01000276
Bacillota
Tetzosporium hominis VT-49 [NOKQ]
1087
1163
+
Pro
TGG
[ENA]
¡û
>W1911495155
OBMQ01000006
Bacillota
Ureibacillus xyleni JC22 [OBMQ]
902
978
+
Pro
TGG
[ENA]
¡û
>W1911495222
OBMQ01000031
Bacillota
Ureibacillus xyleni JC22 [OBMQ]
331
255
-
Pro
TGG
[ENA]
¡û
>W1810426769
PYWJ01000053
Bacillota
Ureibacillus chungkukjangi 2RL32 [PYWJ]
961
1037
+
Pro
TGG
[ENA]
¡û
>W1810426782
PYWJ01000057
Bacillota
Ureibacillus chungkukjangi 2RL32 [PYWJ]
9602
9526
-
Pro
TGG
[ENA]
¡û
>W1810426800
PYWJ01000110
Bacillota
Ureibacillus chungkukjangi 2RL32 [PYWJ]
412
336
-
Pro
TGG
[ENA]
¡û
>W1810672375
QJTJ01000047
Bacillota
Ureibacillus chungkukjangi KACC 16626 [QJTJ]
13153
13077
-
Pro
TGG
[ENA]
¡û
>W1810672388
QJTJ01000052
Bacillota
Ureibacillus chungkukjangi KACC 16626 [QJTJ]
9572
9496
-
Pro
TGG
[ENA]
¡û
>C11114927
AP012200
Bacillota
Melissococcus plutonius ATCC 35311 [AP012200]
297897
297970
+
Pro
TGG
[Ensembl]
¡û
>W1511316028
JPVN01000064
Bacillota
Ureibacillus manganicus DSM 26584 [JPVN]
90
14
-
Pro
TGG
[ENA]
¡û
>W1511316053
JPVO01000003
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [JPVO]
140
64
-
Pro
TGG
[ENA]
¡û
>W1511316067
JPVO01000006
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [JPVO]
528
604
+
Pro
TGG
[ENA]
¡û
>W1511360950
JSAV01000003
Bacillota
Melissococcus plutonius 764-5B [JSAV]
85
158
+
Pro
TGG
[ENA]
¡û
>W1511361008
JSAW01000002
Bacillota
Melissococcus plutonius B5 [JSAW]
698
771
+
Pro
TGG
[ENA]
¡û
>W1511361043
JSAX01000001
Bacillota
Melissococcus plutonius 765-6B [JSAX]
332422
332495
+
Pro
TGG
[ENA]
¡û
>W1511361169
JSAZ01000006
Bacillota
Melissococcus plutonius 90 [JSAZ]
332512
332585
+
Pro
TGG
[ENA]
¡û
>W1511361174
JSBA01000002
Bacillota
Melissococcus plutonius 49.3 [JSBA]
248
321
+
Pro
TGG
[ENA]
¡û
>W1511361231
JSBB01000002
Bacillota
Melissococcus plutonius 119 [JSBB]
103346
103419
+
Pro
TGG
[ENA]
¡û
>W1511361275
JSBC01000001
Bacillota
Melissococcus plutonius H6 [JSBC]
332151
332224
+
Pro
TGG
[ENA]
¡û
>W1511361323
JSBD01000003
Bacillota
Melissococcus plutonius L9 [JSBD]
698
771
+
Pro
TGG
[ENA]
¡û
>W1511361372
JSBE01000001
Bacillota
Melissococcus plutonius 60 [JSBE]
332152
332225
+
Pro
TGG
[ENA]
¡û
>W1511361399
JSBF01000001
Bacillota
Melissococcus plutonius 82 [JSBF]
332248
332321
+
Pro
TGG
[ENA]
¡û
>C161004020
CP006683
Bacillota
Melissococcus plutonius S1 [CP006683]
297826
297899
+
Pro
TGG
[Ensembl]
¡û
>W1710022957
AVCY01000050
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [AVCY]
528
604
+
Pro
TGG
[ENA]
¡û
>W1710022969
AVCY01000053
Bacillota
Ureibacillus sinduriensis BLB-1 = JCM 15800 [AVCY]
140
64
-
Pro
TGG
[ENA]
¡û
>W1710023005
AVDA01000064
Bacillota
Ureibacillus manganicus DSM 26584 [AVDA]
90
14
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK