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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157620 (45 seq.)
>W1711027066
LRDC01000010
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
72783
72868
+
Leu
TAA
[ENA]
¡û
>W1711027072
LRDC01000014
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
40367
40452
+
Leu
TAA
[ENA]
¡û
>C020945
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
1920320
1920405
+
Leu
TAA
[Ensembl]
¡û
>C021973
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
2306289
2306374
+
Leu
TAA
[Ensembl]
¡û
>C022015
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
3174251
3174166
-
Leu
TAA
[Ensembl]
¡û
>w028545
ABDD01000021
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [ABDD]
399
486
+
Leu
TAA
[ENA]
¡û
>w028514
ABDD01000007
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [ABDD]
106622
106535
-
Leu
TAA
[ENA]
¡û
>w028511
ABDD01000007
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [ABDD]
107662
107575
-
Leu
TAA
[ENA]
¡û
>w020053
AAUO01000079
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
7377
7464
+
Leu
TAA
[ENA]
¡û
>w020051
AAUO01000079
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
6464
6551
+
Leu
TAA
[ENA]
¡û
>w019995
AAUO01000026
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
6464
6377
-
Leu
TAA
[ENA]
¡û
>w007702
AAIU01000052
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
22548
22635
+
Leu
TAA
[ENA]
¡û
>C08010604
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
2977797
2977715
-
Leu
TAA
[Ensembl]
¡û
>C08010607
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
2684814
2684732
-
Leu
TAA
[Ensembl]
¡û
>C08010610
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
2683774
2683692
-
Leu
TAA
[Ensembl]
¡û
>WENV182556790
OJDH01000083
[OJDH] seawater metagenome; Sea water
737
652
-
Leu
TAA
[ENA]
¢þ
>WENV182575414
OJFU01015995
[OJFU] seawater metagenome; Sea water
230
145
-
Leu
TAA
[ENA]
¢þ
>WENV182590659
OJIJ01002678
[OJIJ] seawater metagenome; Sea water
365
450
+
Leu
TAA
[ENA]
¢þ
>WENV182594523
OJIV01027935
[OJIV] seawater metagenome; Sea water
406
491
+
Leu
TAA
[ENA]
¢þ
>C08010737
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
2642852
2642937
+
Leu
TAA
[Ensembl]
¡û
>C08010739
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
2643765
2643850
+
Leu
TAA
[Ensembl]
¡û
>C08010742
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
2937091
2937176
+
Leu
TAA
[Ensembl]
¡û
>WENV170023376
BCQK01244432
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
124
209
+
Leu
TAA
[ENA]
¢þ
>C191117194
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
1836208
1836293
+
Leu
TAA
-
¡û
>C191117252
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
2749278
2749193
-
Leu
TAA
-
¡û
>C191173216
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
4475716
4475801
+
Leu
TAA
-
¡û
>C191173258
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
552310
552225
-
Leu
TAA
-
¡û
>C191185847
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
1514168
1514253
+
Leu
TAA
-
¡û
>C191185894
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
2351573
2351488
-
Leu
TAA
-
¡û
>W09103110
AAIV01000015
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
14428
14513
+
Leu
TAA
[ENA]
¡û
>W09103159
AAIV01000058
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
4123
4038
-
Leu
TAA
[ENA]
¡û
>W1810155304
PJAP01000600
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
3654
3739
+
Leu
TAA
[ENA]
¡û
>W1810157802
PJCD01000041
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
70723
70808
+
Leu
TAA
[ENA]
¡û
>W1810157812
PJCD01000042
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
138136
138051
-
Leu
TAA
[ENA]
¡û
>W1810157833
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
151400
151485
+
Leu
TAA
[ENA]
¡û
>W1810157896
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
1061223
1061138
-
Leu
TAA
[ENA]
¡û
>W1610460562
FKJK01000001
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
468324
468239
-
Leu
TAA
[ENA]
¡û
>W1610460564
FKJK01000001
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
467284
467199
-
Leu
TAA
[ENA]
¡û
>W1610460567
FKJK01000001
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
186447
186362
-
Leu
TAA
[ENA]
¡û
>W1610875178
LRDC01000010
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
72783
72868
+
Leu
TAA
[ENA]
¡û
>W1610875184
LRDC01000014
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
40367
40452
+
Leu
TAA
[ENA]
¡û
>WENV078046
AAFY01012916
Fossil microbial community from Whale Fall (Santa Cruz Basin)
227
314
+
Leu
TAA
[ENA]
>W1710460126
FKJK01000001
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
468324
468239
-
Leu
TAA
[ENA]
¡û
>W1710460128
FKJK01000001
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
467284
467199
-
Leu
TAA
[ENA]
¡û
>W1710460131
FKJK01000001
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
186447
186362
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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