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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157716 (49 seq.)
>W1711677725
MRTR01000054
Bacillota
Paenibacillus macerans [MRTR]
44980
44895
-
Tyr
GTA
[ENA]
¡û
>C171098058
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
329050
329135
+
Tyr
GTA
-
¡û
>C171098078
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
3481628
3481713
+
Tyr
GTA
-
¡û
>C171099971
CP019794
Bacillota
Paenibacillus larvae subsp. pulvifaciens ATCC 13537 [CP019794]
2656943
2657028
+
Tyr
GTA
-
¡û
>C171100024
CP019794
Bacillota
Paenibacillus larvae subsp. pulvifaciens ATCC 13537 [CP019794]
1568408
1568323
-
Tyr
GTA
-
¡û
>C171104931
CP020327
Bacillota
Paenibacillus larvae subsp. pulvifaciens CCM 38 [CP020327]
2317193
2317278
+
Tyr
GTA
-
¡û
>C171104982
CP020327
Bacillota
Paenibacillus larvae subsp. pulvifaciens CCM 38 [CP020327]
1245535
1245450
-
Tyr
GTA
-
¡û
>C171109108
CP020557
Bacillota
Paenibacillus larvae subsp. pulvifaciens SAG 10367 [CP020557]
2502624
2502709
+
Tyr
GTA
-
¡û
>C171109164
CP020557
Bacillota
Paenibacillus larvae subsp. pulvifaciens SAG 10367 [CP020557]
1333505
1333420
-
Tyr
GTA
-
¡û
>W131000487
AGEN01000016
Bacillota
Paenibacillus sp. HGH0039 [AGEN]
38616
38531
-
Tyr
GTA
[ENA]
¡û
>W131177542
ARKW01000019
Bacillota
Paenibacillus ginsengihumi DSM 21568 [ARKW]
2351
2266
-
Tyr
GTA
[ENA]
¡û
>W131177574
ARKW01000070
Bacillota
Paenibacillus ginsengihumi DSM 21568 [ARKW]
245
330
+
Tyr
GTA
[ENA]
¡û
>W131195973
ASSZ01000007
Bacillota
Paenibacillus barengoltzii G22 [ASSZ]
2591
2676
+
Tyr
GTA
[ENA]
¡û
>W131196021
ASSZ01000033
Bacillota
Paenibacillus barengoltzii G22 [ASSZ]
219442
219357
-
Tyr
GTA
[ENA]
¡û
>w017333
AARF01000250
Bacillota
Paenibacillus larvae subsp. larvae BRL-230010 [AARF]
9768
9681
-
Tyr
GTA
[ENA]
¡û
>w017310
AARF01000175
Bacillota
Paenibacillus larvae subsp. larvae BRL-230010 [AARF]
367
454
+
Tyr
GTA
[ENA]
¡û
>W141000959
ADFW01000001
Bacillota
Paenibacillus larvae subsp. larvae DSM 25719 [ADFW]
2689259
2689344
+
Tyr
GTA
[ENA]
¡û
>W141001005
ADFW01000002
Bacillota
Paenibacillus larvae subsp. larvae DSM 25719 [ADFW]
597992
598077
+
Tyr
GTA
[ENA]
¡û
>W141276250
JADQ01000022
Bacillota
Paenibacillus sp. J14 [JADQ]
70858
70773
-
Tyr
GTA
[ENA]
¡û
>W141276284
JADQ01000072
Bacillota
Paenibacillus sp. J14 [JADQ]
17550
17465
-
Tyr
GTA
[ENA]
¡û
>W09125274
ACIH01000115
Bacillota
Paenibacillus sp. oral taxon 786 oral taxon 786 str. D14 [ACIH]
935
1020
+
Tyr
GTA
[ENA]
¡û
>C181038481
CP019651
Bacillota
Paenibacillus larvae subsp. larvae ERIC_I [CP019651]
4032646
4032561
-
Tyr
GTA
-
¡û
>C181038502
CP019651
Bacillota
Paenibacillus larvae subsp. larvae ERIC_I [CP019651]
2896495
2896410
-
Tyr
GTA
-
¡û
>C181038520
CP019652
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 DSM 25430; ERIC_II [CP019652]
232628
232713
+
Tyr
GTA
-
¡û
>C181038576
CP019652
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 DSM 25430; ERIC_II [CP019652]
3053059
3052974
-
Tyr
GTA
-
¡û
>C181038602
CP019655
Bacillota
Paenibacillus larvae subsp. larvae Eric_III [CP019655]
252584
252669
+
Tyr
GTA
-
¡û
>C181038653
CP019655
Bacillota
Paenibacillus larvae subsp. larvae Eric_III [CP019655]
3671790
3671705
-
Tyr
GTA
-
¡û
>C181038679
CP019659
Bacillota
Paenibacillus larvae subsp. larvae Eric_IV [CP019659]
252622
252707
+
Tyr
GTA
-
¡û
>C181038730
CP019659
Bacillota
Paenibacillus larvae subsp. larvae Eric_IV [CP019659]
3451266
3451181
-
Tyr
GTA
-
¡û
>W141711647
JMQA01000032
Bacillota
Paenibacillus macerans [JMQA]
44799
44714
-
Tyr
GTA
[ENA]
¡û
>W1910126300
BGML01000025
Bacillota
Paenibacillus macerans DSM 24746 [BGML]
1019
1104
+
Tyr
GTA
[ENA]
¡û
>W1910126378
BGMM01000026
Bacillota
Paenibacillus macerans JCM 17693 [BGMM]
1270
1355
+
Tyr
GTA
[ENA]
¡û
>W1910154585
BILV01000099
Bacillota
Paenibacillus barengoltzii NBRC 101215 [BILV]
17314
17229
-
Tyr
GTA
[ENA]
¡û
>W1910155037
BIMG01000048
Bacillota
Paenibacillus macerans NBRC 15307 [BIMG]
705
790
+
Tyr
GTA
[ENA]
¡û
>C141001405
CP003355
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 [CP003355]
230932
231017
+
Tyr
GTA
[Ensembl]
¡û
>C141001461
CP003355
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 [CP003355]
3076140
3076055
-
Tyr
GTA
[Ensembl]
¡û
>C151005549
CP004078
Bacillota
Paenibacillus sabinae T27 [CP004078]
134551
134636
+
Tyr
GTA
[Ensembl]
¡û
>C151048207
CP009288
Bacillota
Paenibacillus durus DSM 1735 [CP009288]
142072
142157
+
Tyr
GTA
[Ensembl]
¡û
>C151077271
CP011114
Bacillota
Paenibacillus durus ATCC 35681 [CP011114]
4890737
4890822
+
Tyr
GTA
[Ensembl]
¡û
>ENV09003795
ADGO01178520
Compost metagenome contig00001
9
94
+
Tyr
GTA
[ENA]
¡û
>W11130201
ADZY01000233
Bacillota
Paenibacillus larvae subsp. larvae B-3650 [ADZY]
180
95
-
Tyr
GTA
[ENA]
¡û
>W1511585011
LAWY01000017
Bacillota
Paenibacillus larvae MEX14 [LAWY]
75609
75524
-
Tyr
GTA
[ENA]
¡û
>W1511585028
LAWY01000040
Bacillota
Paenibacillus larvae MEX14 [LAWY]
873
958
+
Tyr
GTA
[ENA]
¡û
>W11158458
AFDH01000043
Bacillota
Paenibacillus sp. HGF7 [AFDH]
782
867
+
Tyr
GTA
[ENA]
¡û
>W1710547823
FODH01000007
Bacillota
Paenibacillus sophorae [FODH]
943
1028
+
Tyr
GTA
[ENA]
¡û
>W1710607418
FXAB01000031
Bacillota
Paenibacillus barengoltzii J6 [FXAB]
57910
57825
-
Tyr
GTA
[ENA]
¡û
>W1710607432
FXAB01000045
Bacillota
Paenibacillus barengoltzii J6 [FXAB]
43125
43040
-
Tyr
GTA
[ENA]
¡û
>W1710607575
FXAE01000018
Bacillota
Paenibacillus barengoltzii J12 [FXAE]
1008
1093
+
Tyr
GTA
[ENA]
¡û
>W1710607614
FXAE01000082
Bacillota
Paenibacillus barengoltzii J12 [FXAE]
1148
1233
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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