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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157719 (138 seq.)
>W1711069044
LSFG01000041
Bacillota
Tetragenococcus halophilus [LSFG]
531
606
+
Met
CAT
[ENA]
¡û
>W1711069050
LSFG01000041
Bacillota
Tetragenococcus halophilus [LSFG]
1123
1198
+
Met
CAT
[ENA]
¡û
>C171015387
CP012047
Bacillota
Tetragenococcus halophilus MJ4 [CP012047]
2267198
2267123
-
Met
CAT
-
¡û
>C171015393
CP012047
Bacillota
Tetragenococcus halophilus MJ4 [CP012047]
2266606
2266531
-
Met
CAT
-
¡û
>C171129741
LT630287
Bacillota
Ligilactobacillus acidipiscis ACA-DC 1533 [LT630287]
1016133
1016208
+
Met
CAT
-
¡û
>C171129748
LT630287
Bacillota
Ligilactobacillus acidipiscis ACA-DC 1533 [LT630287]
1016766
1016841
+
Met
CAT
-
¡û
>WENV180216371
OBAQ01070621
[OBAQ] human gut metagenome; human gut
285
211
-
fMet
CAT
[ENA]
¢þ
>WENV180617988
OCQA01113024
[OCQA] human gut metagenome; human gut
198
124
-
fMet
CAT
[ENA]
¢þ
>WENV180730615
ODGV01010308
[ODGV] human metagenome; G_DNA_Stool
1384
1458
+
fMet
CAT
[ENA]
¢þ
>WENV180762486
ODHZ01158446
[ODHZ] human metagenome; G_DNA_Stool
314
240
-
fMet
CAT
[ENA]
¢þ
>WENV181088520
OEBA01002110
[OEBA] human metagenome; G_DNA_Stool
4506
4432
-
fMet
CAT
[ENA]
¢þ
>WENV181127903
OEFW01018259
[OEFW] human metagenome; G_DNA_Stool
260
186
-
fMet
CAT
[ENA]
¢þ
>WENV181247417
OFFK01025089
[OFFK] mouse gut metagenome; faeces
1665
1591
-
fMet
CAT
[ENA]
¢þ
>WENV181342425
OFMI01009767
[OFMI] human gut metagenome; human gut
180
254
+
fMet
CAT
[ENA]
¢þ
>WENV181355811
OFMT01009355
[OFMT] human gut metagenome; human gut
391
317
-
fMet
CAT
[ENA]
¢þ
>WENV181426222
OGCQ01003595
[OGCQ] human gut metagenome; human gut
4
78
+
fMet
CAT
[ENA]
¢þ
>WENV181526218
OGHJ01003683
[OGHJ] metagenome; Human gut stool
10106
10180
+
fMet
CAT
[ENA]
¢þ
>WENV181662096
OGOG01015746
[OGOG] human gut metagenome; faeces
414
340
-
fMet
CAT
[ENA]
¢þ
>WENV181682696
OGOU01015718
[OGOU] human gut metagenome; faeces
38
112
+
fMet
CAT
[ENA]
¢þ
>WENV181693692
OGPA01038107
[OGPA] human gut metagenome; faeces
37
111
+
fMet
CAT
[ENA]
¢þ
>WENV181718968
OGPT01101706
[OGPT] human gut metagenome; faeces
36
110
+
fMet
CAT
[ENA]
¢þ
>WENV181725461
OGPY01002967
[OGPY] human gut metagenome; faeces
8185
8111
-
fMet
CAT
[ENA]
¢þ
>WENV181740352
OGQJ01005647
[OGQJ] human gut metagenome; faeces
5653
5579
-
fMet
CAT
[ENA]
¢þ
>WENV181741456
OGQK01000261
[OGQK] human gut metagenome; faeces
3866
3792
-
fMet
CAT
[ENA]
¢þ
>WENV181753274
OGQR01000139
[OGQR] human gut metagenome; faeces
20972
20898
-
fMet
CAT
[ENA]
¢þ
>WENV181766496
OGQZ01001905
[OGQZ] human gut metagenome; faeces
12249
12175
-
fMet
CAT
[ENA]
¢þ
>WENV181796979
OGRU01000730
[OGRU] human gut metagenome; faeces
2349
2275
-
fMet
CAT
[ENA]
¢þ
>WENV181870344
OGWY01007463
[OGWY] human gut metagenome; faeces
5661
5587
-
fMet
CAT
[ENA]
¢þ
>WENV181902707
OGXW01078604
[OGXW] human gut metagenome; faeces
665
591
-
fMet
CAT
[ENA]
¢þ
>WENV182127551
OHJU01050095
[OHJU] human gut metagenome; feces
13
87
+
fMet
CAT
[ENA]
¢þ
>WENV182142967
OHKU01041920
[OHKU] human gut metagenome; feces
625
551
-
fMet
CAT
[ENA]
¢þ
>WENV182280493
OHUY01000727
[OHUY] human gut metagenome; feces
10097
10023
-
fMet
CAT
[ENA]
¢þ
>WENV182281490
OHVB01004973
[OHVB] human gut metagenome; feces
1235
1161
-
fMet
CAT
[ENA]
¢þ
>WENV182289596
OHVW01000837
[OHVW] human gut metagenome; feces
8793
8719
-
fMet
CAT
[ENA]
¢þ
>WENV182313901
OHXZ01007254
[OHXZ] human gut metagenome; feces
2155
2081
-
fMet
CAT
[ENA]
¢þ
>WENV182315606
OHYC01000290
[OHYC] human gut metagenome; feces
5652
5726
+
fMet
CAT
[ENA]
¢þ
>WENV182322465
OHYO01000123
[OHYO] human gut metagenome; feces
31574
31500
-
fMet
CAT
[ENA]
¢þ
>WENV182357653
OIBT01003907
[OIBT] human gut metagenome; feces
2292
2218
-
fMet
CAT
[ENA]
¢þ
>WENV182359516
OIBX01023581
[OIBX] human gut metagenome; feces
488
562
+
fMet
CAT
[ENA]
¢þ
>WENV182364921
OICI01000460
[OICI] human gut metagenome; feces
3110
3184
+
fMet
CAT
[ENA]
¢þ
>WENV182379605
OIDM01003216
[OIDM] human gut metagenome; feces
112
186
+
fMet
CAT
[ENA]
¢þ
>WENV182381058
OIDQ01000024
[OIDQ] human gut metagenome; feces
33531
33457
-
fMet
CAT
[ENA]
¢þ
>WENV182387200
OIEA01000056
[OIEA] human gut metagenome; feces
32747
32673
-
fMet
CAT
[ENA]
¢þ
>WENV182388057
OIEB01001163
[OIEB] human gut metagenome; feces
112
186
+
fMet
CAT
[ENA]
¢þ
>WENV182513477
OIWM01000580
[OIWM] human gut metagenome; faeces
3537
3611
+
fMet
CAT
[ENA]
¢þ
>WENV182520873
OIWQ01002723
[OIWQ] human gut metagenome; faeces
2257
2183
-
fMet
CAT
[ENA]
¢þ
>WENV182531646
OIXA01000117
[OIXA] human gut metagenome; faeces
75661
75587
-
fMet
CAT
[ENA]
¢þ
>WENV182536755
OIXH01001526
[OIXH] human gut metagenome; faeces
23395
23469
+
fMet
CAT
[ENA]
¢þ
>WENV182539942
OIXV01032722
[OIXV] human gut metagenome; faeces
1380
1306
-
fMet
CAT
[ENA]
¢þ
>WENV182610320
OJJV01081506
[OJJV] metagenome; faeces
528
454
-
fMet
CAT
[ENA]
¢þ
>WENV182621228
OJKI01070109
[OJKI] metagenome; faeces
434
508
+
fMet
CAT
[ENA]
¢þ
>WENV182650261
OJMG01066291
[OJMG] human gut metagenome; feces
285
359
+
fMet
CAT
[ENA]
¢þ
>WENV182794474
OJSP01012875
[OJSP] human gut metagenome; human gut
521
447
-
fMet
CAT
[ENA]
¢þ
>WENV182796439
OJSQ01021434
[OJSQ] human gut metagenome; human gut
1712
1638
-
fMet
CAT
[ENA]
¢þ
>WENV182802524
OJUG01017062
[OJUG] human gut metagenome; human gut
2350
2276
-
fMet
CAT
[ENA]
¢þ
>WENV182879407
OKRZ01012182
[OKRZ] human gut metagenome; faeces
1627
1701
+
fMet
CAT
[ENA]
¢þ
>WENV182939757
OKVF01000540
[OKVF] human gut metagenome; human gut
8399
8325
-
fMet
CAT
[ENA]
¢þ
>WENV183026034
OLFU01000343
[OLFU] human gut metagenome; faeces
35593
35667
+
fMet
CAT
[ENA]
¢þ
>WENV183034371
OLFZ01000032
[OLFZ] human gut metagenome; faeces
31098
31172
+
fMet
CAT
[ENA]
¢þ
>WENV183044769
OLGE01002464
[OLGE] human gut metagenome; faeces
16144
16070
-
fMet
CAT
[ENA]
¢þ
>WENV183051326
OLGI01053502
[OLGI] human gut metagenome; faeces
223
149
-
fMet
CAT
[ENA]
¢þ
>WENV183089127
OLJW01002261
[OLJW] human gut metagenome; human gut
190
264
+
fMet
CAT
[ENA]
¢þ
>WENV183094719
OLND01000114
[OLND] human gut metagenome; faeces
65096
65022
-
fMet
CAT
[ENA]
¢þ
>WENV183109730
OLNN01018677
[OLNN] human gut metagenome; faeces
1080
1006
-
fMet
CAT
[ENA]
¢þ
>WENV183124562
OLNW01021220
[OLNW] human gut metagenome; faeces
2349
2275
-
fMet
CAT
[ENA]
¢þ
>WENV183129066
OLNZ01044779
[OLNZ] human gut metagenome; faeces
114
188
+
fMet
CAT
[ENA]
¢þ
>WENV183153188
OLOQ01052505
[OLOQ] human gut metagenome; faeces
1
75
+
fMet
CAT
[ENA]
¢þ
>WENV183156627
OLOS01016073
[OLOS] human gut metagenome; faeces
842
768
-
fMet
CAT
[ENA]
¢þ
>WENV183170132
OLPA01035345
[OLPA] human gut metagenome; faeces
60
134
+
fMet
CAT
[ENA]
¢þ
>WENV183174326
OLPE01000696
[OLPE] human gut metagenome; faeces
762
688
-
fMet
CAT
[ENA]
¢þ
>WENV183175818
OLPF01000997
[OLPF] human gut metagenome; faeces
2826
2752
-
fMet
CAT
[ENA]
¢þ
>WENV183186640
OLPO01001188
[OLPO] human gut metagenome; faeces
17155
17229
+
fMet
CAT
[ENA]
¢þ
>WENV183193878
OLPS01011794
[OLPS] human gut metagenome; faeces
2798
2872
+
fMet
CAT
[ENA]
¢þ
>WENV183196964
OLPU01008801
[OLPU] human gut metagenome; faeces
4303
4377
+
fMet
CAT
[ENA]
¢þ
>WENV183209815
OLQC01000062
[OLQC] human gut metagenome; faeces
27070
27144
+
fMet
CAT
[ENA]
¢þ
>WENV183221841
OLQL01036939
[OLQL] human gut metagenome; faeces
901
827
-
fMet
CAT
[ENA]
¢þ
>WENV183233154
OLQV01000359
[OLQV] human gut metagenome; faeces
11912
11986
+
fMet
CAT
[ENA]
¢þ
>WENV183240486
OLRA01008203
[OLRA] human gut metagenome; faeces
4597
4671
+
fMet
CAT
[ENA]
¢þ
>WENV183248310
OLRF01055745
[OLRF] human gut metagenome; faeces
104
30
-
fMet
CAT
[ENA]
¢þ
>WENV183252802
OLRI01006074
[OLRI] human gut metagenome; faeces
3928
4002
+
fMet
CAT
[ENA]
¢þ
>WENV183253570
OLRJ01000038
[OLRJ] human gut metagenome; faeces
117754
117828
+
fMet
CAT
[ENA]
¢þ
>WENV183261893
OLRQ01000220
[OLRQ] human gut metagenome; faeces
64540
64466
-
fMet
CAT
[ENA]
¢þ
>WENV183266777
OLRT01010297
[OLRT] human gut metagenome; faeces
3327
3253
-
fMet
CAT
[ENA]
¢þ
>WENV183287085
OLSF01000297
[OLSF] human gut metagenome; faeces
10191
10117
-
fMet
CAT
[ENA]
¢þ
>WENV183306246
OLSX01017400
[OLSX] human gut metagenome; faeces
129
55
-
fMet
CAT
[ENA]
¢þ
>WENV183314975
OLVR01014352
[OLVR] human gut metagenome; faeces
1553
1479
-
fMet
CAT
[ENA]
¢þ
>WENV183318739
OLVU01007561
[OLVU] human gut metagenome; faeces
1355
1281
-
fMet
CAT
[ENA]
¢þ
>WENV183334003
OLWE01033361
[OLWE] human gut metagenome; feces
100
26
-
fMet
CAT
[ENA]
¢þ
>WENV183350334
OLWX01000232
[OLWX] human gut metagenome; feces
2418
2492
+
fMet
CAT
[ENA]
¢þ
>WENV183371910
OLXW01000123
[OLXW] human gut metagenome; feces
55826
55752
-
fMet
CAT
[ENA]
¢þ
>WENV183378922
OLYC01004044
[OLYC] human gut metagenome; feces
4876
4950
+
fMet
CAT
[ENA]
¢þ
>WENV183440659
OMCH01000549
[OMCH] human gut metagenome; feces
424
350
-
fMet
CAT
[ENA]
¢þ
>WENV183453262
OMDD01016059
[OMDD] human gut metagenome; feces
1407
1481
+
fMet
CAT
[ENA]
¢þ
>WENV183481032
OMFJ01022316
[OMFJ] human gut metagenome; feces
79
5
-
fMet
CAT
[ENA]
¢þ
>WENV183507217
OMGY01011385
[OMGY] human gut metagenome; human gut
1814
1888
+
fMet
CAT
[ENA]
¢þ
>WENV183580056
OOCM01014195
[OOCM] human gut metagenome; human gut
2263
2189
-
fMet
CAT
[ENA]
¢þ
>WENV183761896
PPYE01264574
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1314
1240
-
fMet
CAT
[ENA]
¢þ
>WENV170044894
CDYX01023090
[CDYX] gut metagenome; human stools
15066
14992
-
Met
CAT
[ENA]
¢þ
>C181042740
CP020017
Bacillota
Tetragenococcus halophilus KUD23 [CP020017]
2442568
2442643
+
Met
CAT
-
¡û
>C181042746
CP020017
Bacillota
Tetragenococcus halophilus KUD23 [CP020017]
2443160
2443235
+
Met
CAT
-
¡û
>C191055647
CP027768
Bacillota
Tetragenococcus halophilus LMG 26042 [CP027768]
223247
223172
-
Met
CAT
-
¡û
>C191055653
CP027768
Bacillota
Tetragenococcus halophilus LMG 26042 [CP027768]
222651
222576
-
Met
CAT
-
¡û
>W1910007358
BDDY01000134
Bacillota
Tetragenococcus halophilus subsp. halophilus NRIC 0098 [BDDY]
2
77
+
Met
CAT
[ENA]
¡û
>W1910007368
BDDY01000135
Bacillota
Tetragenococcus halophilus subsp. halophilus NRIC 0098 [BDDY]
586
661
+
Met
CAT
[ENA]
¡û
>W1910007437
BDEA01000079
Bacillota
Tetragenococcus halophilus subsp. flandriensis DSM 23766 [BDEA]
498
573
+
Met
CAT
[ENA]
¡û
>W1910007443
BDEA01000079
Bacillota
Tetragenococcus halophilus subsp. flandriensis DSM 23766 [BDEA]
1094
1169
+
Met
CAT
[ENA]
¡û
>W1910007504
BDEB01000257
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7116 [BDEB]
353
278
-
Met
CAT
[ENA]
¡û
>W1910007511
BDEB01000258
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7116 [BDEB]
115
40
-
Met
CAT
[ENA]
¡û
>W1910007562
BDEC01000184
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7118 [BDEC]
786
711
-
Met
CAT
[ENA]
¡û
>W1910007568
BDEC01000184
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7118 [BDEC]
194
119
-
Met
CAT
[ENA]
¡û
>W1910007601
BDED01000070
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7121 [BDED]
494
569
+
Met
CAT
[ENA]
¡û
>W1910007606
BDED01000071
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7121 [BDED]
405
480
+
Met
CAT
[ENA]
¡û
>W1910007643
BDEE01000031
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7125 [BDEE]
417
492
+
Met
CAT
[ENA]
¡û
>W1910007648
BDEE01000032
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7125 [BDEE]
328
403
+
Met
CAT
[ENA]
¡û
>W1910007729
BDEF01000204
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7126 [BDEF]
281
206
-
Met
CAT
[ENA]
¡û
>W1910007754
BDEG01000164
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7128 [BDEG]
194
119
-
Met
CAT
[ENA]
¡û
>W1910007769
BDEG01000234
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7128 [BDEG]
405
480
+
Met
CAT
[ENA]
¡û
>W1910007775
BDEG01000234
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7128 [BDEG]
997
1072
+
Met
CAT
[ENA]
¡û
>W1910007802
BDEH01000044
Bacillota
Tetragenococcus halophilus subsp. halophilus D10 [BDEH]
3109
3034
-
Met
CAT
[ENA]
¡û
>W1910007852
BDEI01000059
Bacillota
Tetragenococcus halophilus subsp. halophilus D-86 [BDEI]
53
128
+
Met
CAT
[ENA]
¡û
>W1911593471
PKOU01000007
Bacillota
Tetragenococcus halophilus R23 [PKOU]
62123
62048
-
Met
CAT
[ENA]
¡û
>W1911593483
PKOU01000009
Bacillota
Tetragenococcus halophilus R23 [PKOU]
785
710
-
Met
CAT
[ENA]
¡û
>W1911593489
PKOU01000009
Bacillota
Tetragenococcus halophilus R23 [PKOU]
191
116
-
Met
CAT
[ENA]
¡û
>W1911640681
PXYA01000002
Bacillota
Tetragenococcus halophilus subsp. halophilus DSM 20339 [PXYA]
715487
715562
+
Met
CAT
[ENA]
¡û
>W1911640687
PXYA01000002
Bacillota
Tetragenococcus halophilus subsp. halophilus DSM 20339 [PXYA]
716079
716154
+
Met
CAT
[ENA]
¡û
>W11185068
BACS01000405
Bacillota
Ligilactobacillus acidipiscis KCTC 13900 [BACS]
75
-1
-
Met
CAT
[ENA]
¡û
>C121000375
AP012046
Bacillota
Tetragenococcus halophilus NBRC 12172 [AP012046]
2440644
2440569
-
Met
CAT
[Ensembl]
¡û
>C121000381
AP012046
Bacillota
Tetragenococcus halophilus NBRC 12172 [AP012046]
2440052
2439977
-
Met
CAT
[Ensembl]
¡û
>W1610036512
AZFI01000238
Bacillota
Ligilactobacillus acidipiscis DSM 15836 [AZFI]
513
588
+
Met
CAT
[ENA]
¡û
>W1610066779
BCPY01000093
Bacillota
Tetragenococcus solitarius NBRC 100494 [BCPY]
194
119
-
Met
CAT
[ENA]
¡û
>W1610066783
BCPY01000097
Bacillota
Tetragenococcus solitarius NBRC 100494 [BCPY]
271
196
-
Met
CAT
[ENA]
¡û
>W1610909614
LSFG01000041
Bacillota
Tetragenococcus halophilus [LSFG]
531
606
+
Met
CAT
[ENA]
¡û
>W1610909620
LSFG01000041
Bacillota
Tetragenococcus halophilus [LSFG]
1123
1198
+
Met
CAT
[ENA]
¡û
>W1710033551
AZFI01000238
Bacillota
Ligilactobacillus acidipiscis DSM 15836 [AZFI]
513
588
+
Met
CAT
[ENA]
¡û
>W1710064117
BCPY01000093
Bacillota
Tetragenococcus solitarius NBRC 100494 [BCPY]
194
119
-
Met
CAT
[ENA]
¡û
>W1710064121
BCPY01000097
Bacillota
Tetragenococcus solitarius NBRC 100494 [BCPY]
271
196
-
Met
CAT
[ENA]
¡û
>W1710087238
BDQH01000231
Bacillota
Ligilactobacillus acidipiscis [BDQH]
1195
1270
+
Met
CAT
[ENA]
¡û
>W1710087245
BDQH01000231
Bacillota
Ligilactobacillus acidipiscis [BDQH]
1828
1903
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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