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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157796 (102 seq.)
>W1710868427
LMJB01000006
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
798844
798767
-
Val
TAC
[ENA]
¡û
>W1710868446
LMJB01000009
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
438184
438261
+
Val
TAC
[ENA]
¡û
>W1710872480
LMMA01000003
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
127698
127775
+
Val
TAC
[ENA]
¡û
>W1710872510
LMMA01000034
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
188721
188644
-
Val
TAC
[ENA]
¡û
>W1711088269
LSYT01000001
Bacteroidota
Flavobacterium chilense [LSYT]
330688
330765
+
Val
TAC
[ENA]
¡û
>W1711088270
LSYT01000001
Bacteroidota
Flavobacterium chilense [LSYT]
450609
450684
+
Val
TAC
[ENA]
¡û
>W1711088292
LSYT01000007
Bacteroidota
Flavobacterium chilense [LSYT]
3500
3423
-
Val
TAC
[ENA]
¡û
>W1711431906
MIKE01000024
Bacteroidota
Flavobacterium tructae spartansii [MIKE]
512817
512894
+
Val
TAC
[ENA]
¡û
>W1711431911
MIKE01000025
Bacteroidota
Flavobacterium tructae spartansii [MIKE]
91487
91564
+
Val
TAC
[ENA]
¡û
>W1711431912
MIKE01000025
Bacteroidota
Flavobacterium tructae spartansii [MIKE]
93431
93508
+
Val
TAC
[ENA]
¡û
>W1711712609
MTCC01000013
Bacteroidota
Flavobacterium psychrophilum [MTCC]
185330
185405
+
Val
TAC
[ENA]
¡û
>W1711712615
MTCC01000015
Bacteroidota
Flavobacterium psychrophilum [MTCC]
15346
15423
+
Val
TAC
[ENA]
¡û
>W1711743991
MUFW01000001
Bacteroidota
Flavobacterium sp. LM4 [MUFW]
160911
160834
-
Val
TAC
[ENA]
¡û
>W1711744006
MUFW01000005
Bacteroidota
Flavobacterium sp. LM4 [MUFW]
255190
255113
-
Val
TAC
[ENA]
¡û
>W1711966526
NCWQ01000002
Bacteroidota
Flavobacterium sp. AJR [NCWQ]
107389
107312
-
Val
TAC
[ENA]
¡û
>W1711966573
NCWQ01000100
Bacteroidota
Flavobacterium sp. AJR [NCWQ]
5891
5814
-
Val
TAC
[ENA]
¡û
>W1711966574
NCWQ01000100
Bacteroidota
Flavobacterium sp. AJR [NCWQ]
354
277
-
Val
TAC
[ENA]
¡û
>W131225335
AUDM01000006
Bacteroidota
Flavobacterium filum DSM 17961 [AUDM]
171291
171368
+
Val
TAC
[ENA]
¡û
>C009502
AM398681
Bacteroidota
Flavobacterium psychrophilum JIP02/86 [AM398681]
1231906
1231983
+
Val
TAC
[Ensembl]
¡û
>C009534
AM398681
Bacteroidota
Flavobacterium psychrophilum JIP02/86 [AM398681]
653936
653859
-
Val
TAC
[Ensembl]
¡û
>WENV180693074
OCZS010984991
[OCZS] soil metagenome; soil
69
144
+
Val
TAC
[ENA]
¢þ
>WENV181838708
OGVN01011741
[OGVN] freshwater metagenome; freshwater
669
592
-
Val
TAC
[ENA]
¢þ
>WENV181838898
OGVN01031622
[OGVN] freshwater metagenome; freshwater
320
397
+
Val
TAC
[ENA]
¢þ
>WENV183522135
OMOM01000166
[OMOM] seawater metagenome; Sea water
32199
32276
+
Val
TAC
[ENA]
¢þ
>WENV183734754
PJUA01000003
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
433910
433985
+
Val
TAC
[ENA]
¢þ
>WENV183734806
PJUA01000021
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
169986
169911
-
Val
TAC
[ENA]
¢þ
>WENV183734807
PJUA01000021
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
168920
168845
-
Val
TAC
[ENA]
¢þ
>WENV170271648
CERJ01073679
[CERJ] marine metagenome genome assembly TARA_066_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
291
368
+
Val
TAC
[ENA]
¢þ
>WENV170305432
CESI01145397
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
169
246
+
Val
TAC
[ENA]
¢þ
>WENV170680922
LFEF01034587
[LFEF] freshwater metagenome; waterbloom
11352
11429
+
Val
TAC
[ENA]
¢þ
>WENV170709948
LNFM01000967
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
14492
14415
-
Val
TAC
[ENA]
¢þ
>WENV170709949
LNFM01000967
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
14377
14300
-
Val
TAC
[ENA]
¢þ
>C181202202
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
173777
173854
+
Val
TAC
-
¡û
>C181202242
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
2747287
2747212
-
Val
TAC
-
¡û
>W141726680
JNCA01000014
Bacteroidota
Flavobacterium seoulense EM1321 [JNCA]
104859
104936
+
Val
TAC
[ENA]
¡û
>W141726681
JNCA01000014
Bacteroidota
Flavobacterium seoulense EM1321 [JNCA]
104972
105049
+
Val
TAC
[ENA]
¡û
>W141726703
JNCA01000032
Bacteroidota
Flavobacterium seoulense EM1321 [JNCA]
33928
34005
+
Val
TAC
[ENA]
¡û
>W141820196
JQMS01000001
Bacteroidota
Flavobacterium sp. 83 [JQMS]
427534
427611
+
Val
TAC
[ENA]
¡û
>W141820218
JQMS01000001
Bacteroidota
Flavobacterium sp. 83 [JQMS]
2973168
2973245
+
Val
TAC
[ENA]
¡û
>W1910184694
BJSY01000024
Bacteroidota
Flavobacterium psychrophilum NNS5-1804 [BJSY]
1231
1156
-
Val
TAC
[ENA]
¡û
>W1910184698
BJSY01000037
Bacteroidota
Flavobacterium psychrophilum NNS5-1804 [BJSY]
2652
2727
+
Val
TAC
[ENA]
¡û
>W1910184734
BJSZ01000035
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
2651
2726
+
Val
TAC
[ENA]
¡û
>W1910184753
BJSZ01000097
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
36980
37055
+
Val
TAC
[ENA]
¡û
>W1910502992
FYBY01000044
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
186100
186175
+
Val
TAC
[ENA]
¡û
>W1910503151
FYCD01000029
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
186087
186162
+
Val
TAC
[ENA]
¡û
>W1910503168
FYCD01000048
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
47786
47711
-
Val
TAC
[ENA]
¡û
>W1910547013
FZNL01000008
Bacteroidota
Flavobacterium sp. ov086 ov086 OV086 [FZNL]
210676
210753
+
Val
TAC
[ENA]
¡û
>W1910547046
FZNL01000029
Bacteroidota
Flavobacterium sp. ov086 ov086 OV086 [FZNL]
54655
54730
+
Val
TAC
[ENA]
¡û
>W1910809401
MUHC01000020
Bacteroidota
Flavobacterium piscis CCUG 60099 [MUHC]
56063
56138
+
Val
TAC
[ENA]
¡û
>W1910809431
MUHC01000067
Bacteroidota
Flavobacterium piscis CCUG 60099 [MUHC]
15264
15189
-
Val
TAC
[ENA]
¡û
>W1911747545
QWDM01000006
Bacteroidota
Flavobacterium cupreum CCM 8825 [QWDM]
348233
348308
+
Val
TAC
[ENA]
¡û
>W1911747574
QWDM01000020
Bacteroidota
Flavobacterium cupreum CCM 8825 [QWDM]
110827
110902
+
Val
TAC
[ENA]
¡û
>W1911747607
QWDN01000005
Bacteroidota
Flavobacterium circumlabens CCM 8828 [QWDN]
15679
15604
-
Val
TAC
[ENA]
¡û
>W1911747608
QWDN01000006
Bacteroidota
Flavobacterium circumlabens CCM 8828 [QWDN]
286581
286506
-
Val
TAC
[ENA]
¡û
>W1810072027
PEFC01000001
Bacteroidota
Flavobacterium sp. 2 [PEFC]
1272100
1272177
+
Val
TAC
[ENA]
¡û
>W1810072065
PEFC01000003
Bacteroidota
Flavobacterium sp. 2 [PEFC]
26000
25923
-
Val
TAC
[ENA]
¡û
>W1810089333
PGER01000001
Bacteroidota
Flavobacterium sp. 1 [PGER]
4941011
4940936
-
Val
TAC
[ENA]
¡û
>W1810089356
PGER01000001
Bacteroidota
Flavobacterium sp. 1 [PGER]
1466658
1466583
-
Val
TAC
[ENA]
¡û
>SRA1002882
SRR002326.72313
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
98
173
+
Val
TAC
[SRA]
>W1810596062
QGGJ01000006
Bacteroidota
Flavobacterium araucananum DSM 24704 [QGGJ]
290599
290674
+
Val
TAC
[ENA]
¡û
>W1810596067
QGGJ01000007
Bacteroidota
Flavobacterium araucananum DSM 24704 [QGGJ]
25440
25515
+
Val
TAC
[ENA]
¡û
>W1810669737
QJRI01000163
Bacteroidota
Flavobacterium nitrogenifigens NXU-44 [QJRI]
104113
104188
+
Val
TAC
[ENA]
¡û
>W1810669776
QJRI01000182
Bacteroidota
Flavobacterium nitrogenifigens NXU-44 [QJRI]
13185
13110
-
Val
TAC
[ENA]
¡û
>W1810676029
QKLS01000001
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
772689
772614
-
Val
TAC
[ENA]
¡û
>W1810676030
QKLS01000001
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
765727
765652
-
Val
TAC
[ENA]
¡û
>W1810676037
QKLS01000002
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
487380
487455
+
Val
TAC
[ENA]
¡û
>W1810684422
QKXH01000013
Bacteroidota
Flavobacterium aquariorum IMCC34762 [QKXH]
114559
114636
+
Val
TAC
[ENA]
¡û
>W1810684426
QKXH01000015
Bacteroidota
Flavobacterium aquariorum IMCC34762 [QKXH]
41276
41353
+
Val
TAC
[ENA]
¡û
>W1810763349
QQBA01000001
Bacteroidota
Flavobacterium glaciei DSM 19728 [QQBA]
410117
410192
+
Val
TAC
[ENA]
¡û
>W1810763384
QQBA01000020
Bacteroidota
Flavobacterium glaciei DSM 19728 [QQBA]
510
433
-
Val
TAC
[ENA]
¡û
>C151039000
CP008881
Bacteroidota
Flavobacterium psychrophilum V4-24 [CP008881]
1102815
1102892
+
Val
TAC
[Ensembl]
¡û
>C151039026
CP008881
Bacteroidota
Flavobacterium psychrophilum V4-24 [CP008881]
587979
587902
-
Val
TAC
[Ensembl]
¡û
>C151065102
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
1228909
1228986
+
Val
TAC
-
¡û
>C151065134
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
652106
652029
-
Val
TAC
-
¡û
>W1511357237
JRWC01000004
Bacteroidota
Flavobacterium psychrophilum CR [JRWC]
396023
396100
+
Val
TAC
[ENA]
¡û
>W1511357242
JRWC01000005
Bacteroidota
Flavobacterium psychrophilum CR [JRWC]
198944
199021
+
Val
TAC
[ENA]
¡û
>W1511357371
JRWF01000027
Bacteroidota
Flavobacterium psychrophilum TR [JRWF]
39519
39442
-
Val
TAC
[ENA]
¡û
>W1511357377
JRWF01000048
Bacteroidota
Flavobacterium psychrophilum TR [JRWF]
681
604
-
Val
TAC
[ENA]
¡û
>W1511526822
JYGZ01000001
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
679040
678963
-
Val
TAC
[ENA]
¡û
>W1511526839
JYGZ01000003
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
529394
529319
-
Val
TAC
[ENA]
¡û
>C161024421
CP010275
Bacteroidota
Flavobacterium psychrophilum MH1 [CP010275]
1226069
1226146
+
Val
TAC
-
¡û
>C161024453
CP010275
Bacteroidota
Flavobacterium psychrophilum MH1 [CP010275]
652316
652239
-
Val
TAC
-
¡û
>W1610534851
JRLF01000003
Bacteroidota
Flavobacterium aquidurense [JRLF]
31787
31864
+
Val
TAC
[ENA]
¡û
>W1610534859
JRLF01000006
Bacteroidota
Flavobacterium aquidurense [JRLF]
114400
114477
+
Val
TAC
[ENA]
¡û
>W1610730773
LMJB01000006
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
798844
798767
-
Val
TAC
[ENA]
¡û
>W1610730792
LMJB01000009
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
438184
438261
+
Val
TAC
[ENA]
¡û
>W1610734826
LMMA01000003
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
127698
127775
+
Val
TAC
[ENA]
¡û
>W1610734856
LMMA01000034
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
188721
188644
-
Val
TAC
[ENA]
¡û
>W1610922808
LSYT01000001
Bacteroidota
Flavobacterium chilense [LSYT]
330688
330765
+
Val
TAC
[ENA]
¡û
>W1610922809
LSYT01000001
Bacteroidota
Flavobacterium chilense [LSYT]
450609
450684
+
Val
TAC
[ENA]
¡û
>W1610922831
LSYT01000007
Bacteroidota
Flavobacterium chilense [LSYT]
3500
3423
-
Val
TAC
[ENA]
¡û
>W1710087853
BDSH01000006
Bacteroidota
Flavobacterium psychrophilum [BDSH]
61573
61496
-
Val
TAC
[ENA]
¡û
>W1710087877
BDSH01000057
Bacteroidota
Flavobacterium psychrophilum [BDSH]
1177
1100
-
Val
TAC
[ENA]
¡û
>W1710539674
FNVP01000004
Bacteroidota
Flavobacterium urumqiense [FNVP]
40473
40550
+
Val
TAC
[ENA]
¡û
>W1710555818
FOJT01000002
Bacteroidota
Flavobacterium swingsii [FOJT]
11558
11635
+
Val
TAC
[ENA]
¡û
>W1710555820
FOJT01000002
Bacteroidota
Flavobacterium swingsii [FOJT]
456826
456749
-
Val
TAC
[ENA]
¡û
>W1710559025
FOMH01000019
Bacteroidota
Flavobacterium phragmitis [FOMH]
104382
104459
+
Val
TAC
[ENA]
¡û
>W1710585724
FQWO01000005
Bacteroidota
Flavobacterium granuli [FQWO]
200586
200511
-
Val
TAC
[ENA]
¡û
>W1710585734
FQWO01000012
Bacteroidota
Flavobacterium granuli [FQWO]
126748
126825
+
Val
TAC
[ENA]
¡û
>W1710591544
FRBU01000003
Bacteroidota
Flavobacterium xanthum [FRBU]
123187
123264
+
Val
TAC
[ENA]
¡û
>W1710637087
JRLF01000003
Bacteroidota
Flavobacterium aquidurense [JRLF]
31787
31864
+
Val
TAC
[ENA]
¡û
>W1710637095
JRLF01000006
Bacteroidota
Flavobacterium aquidurense [JRLF]
114400
114477
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK