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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158139 (73 seq.)
>A171000112
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1157080
1157003
-
Met
CAT
-
¡û
>A171000913
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1533971
1533894
-
Met
CAT
-
¡û
>A171000936
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
2664807
2664731
-
Met
CAT
-
¡û
>A171002019
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
221647
221721
+
Met
CAT
-
¡û
>A171002256
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
2346180
2346106
-
Met
CAT
-
¡û
>A171003564
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1867208
1867133
-
Met
CAT
-
¡û
>A171003998
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
2291200
2291125
-
Met
CAT
-
¡û
>A171006548
CP014265
Euryarchaeota
Methanobrevibacter olleyae YLM1 [CP014265]
2164611
2164687
+
Met
CAT
-
¡û
>A171007324
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1852673
1852598
-
Met
CAT
-
¡û
>A171007373
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1144699
1144624
-
Met
CAT
-
¡û
>A171007407
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2291553
2291478
-
Met
CAT
-
¡û
>A171007672
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
2246165
2246091
-
Met
CAT
-
¡û
>A171007717
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1544342
1544265
-
Met
CAT
-
¡û
>WENV180037877
FVAA011916603
[FVAA] soil metagenome; Soil
113
39
-
fMet
CAT
[ENA]
¢þ
>WENV180220984
OBAX01001860
[OBAX] human gut metagenome; human gut
1522
1445
-
fMet
CAT
[ENA]
¢þ
>WENV180246548
OBDP01002291
[OBDP] human gut metagenome; human gut
1573
1496
-
fMet
CAT
[ENA]
¢þ
>WENV180545376
OCIT01004476
[OCIT] human gut metagenome; human gut
20
97
+
fMet
CAT
[ENA]
¢þ
>WENV180667537
OCVV011237574
[OCVV] gut metagenome; gut
23510
23436
-
fMet
CAT
[ENA]
¢þ
>WENV180667540
OCVV011237574
[OCVV] gut metagenome; gut
23510
23436
-
fMet
CAT
[ENA]
¢þ
>WENV180669409
OCVV011280360
[OCVV] gut metagenome; gut
6997
7073
+
fMet
CAT
[ENA]
¢þ
>WENV180669411
OCVV011280360
[OCVV] gut metagenome; gut
6997
7073
+
fMet
CAT
[ENA]
¢þ
>WENV180672415
OCVV011326470
[OCVV] gut metagenome; gut
6881
6957
+
fMet
CAT
[ENA]
¢þ
>WENV180672416
OCVV011326470
[OCVV] gut metagenome; gut
6881
6957
+
fMet
CAT
[ENA]
¢þ
>WENV180686275
OCVV012884026
[OCVV] gut metagenome; gut
56
132
+
fMet
CAT
[ENA]
¢þ
>WENV180686276
OCVV012884026
[OCVV] gut metagenome; gut
56
132
+
fMet
CAT
[ENA]
¢þ
>WENV180871319
ODLN01041637
[ODLN] human metagenome; G_DNA_Stool
305
228
-
fMet
CAT
[ENA]
¢þ
>WENV181229680
OFEK01000020
[OFEK] activated sludge metagenome; Anaerobic digester
4247
4173
-
fMet
CAT
[ENA]
¢þ
>WENV181230442
OFEK01000966
[OFEK] activated sludge metagenome; Anaerobic digester
8257
8332
+
fMet
CAT
[ENA]
¢þ
>WENV183133070
OLOB01021673
[OLOB] human gut metagenome; faeces
26
103
+
fMet
CAT
[ENA]
¢þ
>WENV183205648
OLPZ01024262
[OLPZ] human gut metagenome; faeces
789
866
+
fMet
CAT
[ENA]
¢þ
>WENV183296216
OLSL01018811
[OLSL] human gut metagenome; faeces
1162
1085
-
fMet
CAT
[ENA]
¢þ
>WENV183507852
OMGY01088743
[OMGY] human gut metagenome; human gut
514
437
-
fMet
CAT
[ENA]
¢þ
>WENV170021299
BBPF01005721
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
4555
4629
+
Met
CAT
[ENA]
¢þ
>WENV170668889
LAHQ01093033
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
107
33
-
Met
CAT
[ENA]
¢þ
>WENV170669177
LAHR01026888
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
483
557
+
Met
CAT
[ENA]
¢þ
>WENV170670640
LAHT01099257
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
90
16
-
Met
CAT
[ENA]
¢þ
>WENV170671605
LAHU01102728
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
1606
1532
-
Met
CAT
[ENA]
¢þ
>WENV170671696
LAHU01133190
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
1100
1174
+
Met
CAT
[ENA]
¢þ
>WENV170675911
LDZQ01001234
[LDZQ] terrestrial metagenome; oil reservoir sample I2
9053
8974
-
Met
CAT
[ENA]
¢þ
>WENV170675919
LDZQ01001315
[LDZQ] terrestrial metagenome; oil reservoir sample I2
86
7
-
Met
CAT
[ENA]
¢þ
>WENV170677332
LDZT01005048
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1894
1819
-
Met
CAT
[ENA]
¢þ
>WENV170678220
LDZT01012360
[LDZT] terrestrial metagenome; oil reservoir sample SB1
742
816
+
Met
CAT
[ENA]
¢þ
>WENV170718725
LSQX01088507
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
981
1056
+
Met
CAT
[ENA]
¢þ
>At1575
CP000102
Euryarchaeota
Methanosphaera stadtmanae DSM 3091 [CP000102]
1676310
1676384
+
Met
CAT
[Ensembl]
¡û
>At1682
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
1174269
1174195
-
Met
CAT
[Ensembl]
¡û
>WENV170972432
MTKX01029840
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
100
25
-
Met
CAT
[ENA]
¢þ
>WENV170975906
MTKZ01003139
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
22441
22516
+
Met
CAT
[ENA]
¢þ
>W1910230547
FOTL01000027
Euryarchaeota
Methanobrevibacter olleyae DSM 16632 [FOTL]
22685
22761
+
Met
CAT
[ENA]
¡û
>W1910574931
JQJK01000016
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
58843
58918
+
Met
CAT
[ENA]
¡û
>W1910574966
JQKN01000012
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
53175
53250
+
Met
CAT
[ENA]
¡û
>W1910575105
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
2230035
2229961
-
Met
CAT
[ENA]
¡û
>W1910576038
JRWK01000013
Euryarchaeota
Methanosphaera sp. WGK6 [JRWK]
20298
20221
-
Met
CAT
[ENA]
¡û
>W1910583612
JXMW01000001
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 DH1 [JXMW]
225941
225865
-
Met
CAT
[ENA]
¡û
>W1910635127
LMVM01000012
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
303581
303656
+
Met
CAT
[ENA]
¡û
>W1910635155
LMVN01000001
Euryarchaeota
Methanosphaera cuniculi 1R-7 [LMVN]
130495
130570
+
Met
CAT
[ENA]
¡û
>W1910646624
LWMS01000020
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
130567
130642
+
Met
CAT
[ENA]
¡û
>W1910655463
LZPM01000029
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
107943
107868
-
Met
CAT
[ENA]
¡û
>W1910656131
MAIF01000108
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
7326
7403
+
Met
CAT
[ENA]
¡û
>W1910899168
NGJK01000093
Euryarchaeota
Methanosphaera stadtmanae PA5 [NGJK]
14583
14660
+
Met
CAT
[ENA]
¡û
>W1910938895
NIZT01000038
Euryarchaeota
Candidatus Methanobinarius endosymbioticus NOE [NIZT]
52707
52783
+
Met
CAT
[ENA]
¡û
>W1911690442
QLOE01000002
Euryarchaeota
Methanothermobacter tenebrarum MCM B 1447 [QLOE]
175240
175164
-
Met
CAT
[ENA]
¡û
>W1911722779
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
80481
80558
+
Met
CAT
[ENA]
¡û
>W1610006245
AMGN01000073
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
4578
4653
+
Met
CAT
[ENA]
¡û
>W1610011004
AMPO01000001
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
144186
144111
-
Met
CAT
[ENA]
¡û
>W1610040620
BAGX02000020
Euryarchaeota
Methanobrevibacter boviskoreani JH1 [BAGX]
170563
170488
-
Met
CAT
[ENA]
¡û
>W1610049191
BBET01000031
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 [BBET]
9595
9671
+
Met
CAT
[ENA]
¡û
>W1610083210
CBVX010000001
Euryarchaeota
Methanobrevibacter arboriphilus ANOR1 [CBVX]
519238
519162
-
Met
CAT
[ENA]
¡û
>W1610612490
LGEU01000048
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
9053
8974
-
Met
CAT
[ENA]
¡û
>W1610612498
LGEU01000129
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
86
7
-
Met
CAT
[ENA]
¡û
>W1610613886
LGGL01000155
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
1894
1819
-
Met
CAT
[ENA]
¡û
>W1610990676
LWMT01000149
Euryarchaeota
Methanobrevibacter filiformis DSM 11501 [LWMT]
1963
1888
-
Met
CAT
[ENA]
¡û
>W1610990732
LWMV01000159
Euryarchaeota
Methanobrevibacter curvatus DSM 11111 [LWMV]
3017
3091
+
Met
CAT
[ENA]
¡û
>W1610990773
LWMW01000118
Euryarchaeota
Methanobrevibacter cuticularis DSM 11139 [LWMW]
15671
15747
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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