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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158241 (30 seq.)
>W1710809713
LKET01000051
Bacillota
Oxobacter pfennigii [LKET]
157446
157370
-
Asp
GTC
[ENA]
¡û
>W1710809726
LKET01000068
Bacillota
Oxobacter pfennigii [LKET]
65176
65100
-
Asp
GTC
[ENA]
¡û
>W1710810661
LKHP01000004
Bacillota
Caloramator mitchellensis [LKHP]
167374
167298
-
Asp
GTC
[ENA]
¡û
>W1710810676
LKHP01000009
Bacillota
Caloramator mitchellensis [LKHP]
30197
30273
+
Asp
GTC
[ENA]
¡û
>WENV181226145
OFDK01000095
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
15060
15136
+
Asp
GTC
[ENA]
¢þ
>W141149959
AXAA01000002
Bacillota
Caloramator sp. ALD01 [AXAA]
123536
123460
-
Asp
GTC
[ENA]
¡û
>W141149988
AXAA01000015
Bacillota
Caloramator sp. ALD01 [AXAA]
39144
39068
-
Asp
GTC
[ENA]
¡û
>W141150003
AXAA01000042
Bacillota
Caloramator sp. ALD01 [AXAA]
534
610
+
Asp
GTC
[ENA]
¡û
>W141244549
CAKP01000002
Bacillota
Caloramator australicus RC3 [CAKP]
24986
24910
-
Asp
GTC
[ENA]
¡û
>W141244570
CAKP01000036
Bacillota
Caloramator australicus RC3 [CAKP]
690
766
+
Asp
GTC
[ENA]
¡û
>W141244578
CAKP01000078
Bacillota
Caloramator australicus RC3 [CAKP]
962
886
-
Asp
GTC
[ENA]
¡û
>WENV182758831
OJRI01029671
[OJRI] human gut metagenome; stool sample
299
374
+
Asp
GTC
[ENA]
¢þ
>WENV170637599
JFBN01345368
[JFBN] chicken gut metagenome; ceca of Broiler chicken
420
495
+
Asp
GTC
[ENA]
¢þ
>WENV170778481
LXOW01408448
[LXOW] bovine gut metagenome; Cow rumen
1592
1668
+
Asp
GTC
[ENA]
¢þ
>C191012395
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
2845214
2845138
-
Asp
GTC
-
¡û
>C191012399
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
2844871
2844795
-
Asp
GTC
-
¡û
>C191174930
CP040093
Bacillota
Caloramator sp. E03 [CP040093]
1612323
1612399
+
Asp
GTC
-
¡û
>C191174973
CP040093
Bacillota
Caloramator sp. E03 [CP040093]
793735
793659
-
Asp
GTC
-
¡û
>C151036030
CP008713
Bacillota
Candidatus Arthromitus sp. SFB-mouse-NL [CP008713]
1612291
1612367
+
Asp
GTC
[Ensembl]
¡û
>W1610673819
LKET01000051
Bacillota
Oxobacter pfennigii [LKET]
157446
157370
-
Asp
GTC
[ENA]
¡û
>W1610673832
LKET01000068
Bacillota
Oxobacter pfennigii [LKET]
65176
65100
-
Asp
GTC
[ENA]
¡û
>W1610674716
LKHP01000004
Bacillota
Caloramator mitchellensis [LKHP]
167374
167298
-
Asp
GTC
[ENA]
¡û
>W1610674731
LKHP01000009
Bacillota
Caloramator mitchellensis [LKHP]
30197
30273
+
Asp
GTC
[ENA]
¡û
>W1710538277
FNUK01000021
Bacillota
Caloramator fervidus [FNUK]
15769
15693
-
Asp
GTC
[ENA]
¡û
>W1710584015
FQVG01000006
Bacillota
Caloramator proteoclasticus DSM 10124 [FQVG]
23462
23538
+
Asp
GTC
[ENA]
¡û
>W1710584037
FQVG01000023
Bacillota
Caloramator proteoclasticus DSM 10124 [FQVG]
3414
3490
+
Asp
GTC
[ENA]
¡û
>W1710584046
FQVG01000042
Bacillota
Caloramator proteoclasticus DSM 10124 [FQVG]
22961
22885
-
Asp
GTC
[ENA]
¡û
>W1710584049
FQVG01000068
Bacillota
Caloramator proteoclasticus DSM 10124 [FQVG]
327
403
+
Asp
GTC
[ENA]
¡û
>W1710602536
FUYH01000009
Bacillota
Caloramator quimbayensis [FUYH]
84855
84779
-
Asp
GTC
[ENA]
¡û
>W1710602570
FUYH01000023
Bacillota
Caloramator quimbayensis [FUYH]
34836
34760
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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