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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158476 (31 seq.)
>W1710987338
LPUO01000027
Gammaproteobacteria
Aeromonas schubertii [LPUO]
2968
2883
-
Leu
CAG
[ENA]
¡û
>W1710987339
LPUO01000027
Gammaproteobacteria
Aeromonas schubertii [LPUO]
2832
2747
-
Leu
CAG
[ENA]
¡û
>W1710987340
LPUO01000027
Gammaproteobacteria
Aeromonas schubertii [LPUO]
2704
2619
-
Leu
CAG
[ENA]
¡û
>W1710987341
LPUO01000027
Gammaproteobacteria
Aeromonas schubertii [LPUO]
2576
2491
-
Leu
CAG
[ENA]
¡û
>W1710987372
LPUO01000054
Gammaproteobacteria
Aeromonas schubertii [LPUO]
31968
31883
-
Leu
CAG
[ENA]
¡û
>W131124543
APVG01000001
Gammaproteobacteria
Aeromonas diversa 2478-85 [APVG]
207025
206940
-
Leu
CAG
[ENA]
¡û
>WENV170657902
JTFP01031680
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
53
138
+
Leu
CAG
[ENA]
¢þ
>C191170484
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
3743059
3743144
+
Leu
CAG
-
¡û
>C191170485
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
3743195
3743280
+
Leu
CAG
-
¡û
>C191170487
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
3743452
3743537
+
Leu
CAG
-
¡û
>C191170488
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
3743580
3743665
+
Leu
CAG
-
¡û
>C191170497
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
4127048
4126963
-
Leu
CAG
-
¡û
>W1510066063
CDBY01000032
Gammaproteobacteria
Aeromonas simiae CIP 107798 [CDBY]
66220
66305
+
Leu
CAG
[ENA]
¡û
>W1510066498
CDCE01000020
Gammaproteobacteria
Aeromonas diversa CECT 4254 [CDCE]
86262
86177
-
Leu
CAG
[ENA]
¡û
>W1510066500
CDCE01000020
Gammaproteobacteria
Aeromonas diversa CECT 4254 [CDCE]
86000
85915
-
Leu
CAG
[ENA]
¡û
>W1510067514
CDDB01000049
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
145887
145972
+
Leu
CAG
[ENA]
¡û
>W1510067576
CDDB01000100
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
14965
15050
+
Leu
CAG
[ENA]
¡û
>W1510067577
CDDB01000100
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
15102
15187
+
Leu
CAG
[ENA]
¡û
>C161050650
CP013067
Gammaproteobacteria
Aeromonas schubertii WL1483 [CP013067]
243021
243106
+
Leu
CAG
[Ensembl]
¡û
>C161050694
CP013067
Gammaproteobacteria
Aeromonas schubertii WL1483 [CP013067]
3734528
3734613
+
Leu
CAG
[Ensembl]
¡û
>C161050696
CP013067
Gammaproteobacteria
Aeromonas schubertii WL1483 [CP013067]
3734785
3734870
+
Leu
CAG
[Ensembl]
¡û
>C161050697
CP013067
Gammaproteobacteria
Aeromonas schubertii WL1483 [CP013067]
3734913
3734998
+
Leu
CAG
[Ensembl]
¡û
>W1610842282
LPUO01000027
Gammaproteobacteria
Aeromonas schubertii [LPUO]
2968
2883
-
Leu
CAG
[ENA]
¡û
>W1610842283
LPUO01000027
Gammaproteobacteria
Aeromonas schubertii [LPUO]
2832
2747
-
Leu
CAG
[ENA]
¡û
>W1610842284
LPUO01000027
Gammaproteobacteria
Aeromonas schubertii [LPUO]
2704
2619
-
Leu
CAG
[ENA]
¡û
>W1610842285
LPUO01000027
Gammaproteobacteria
Aeromonas schubertii [LPUO]
2576
2491
-
Leu
CAG
[ENA]
¡û
>W1610842316
LPUO01000054
Gammaproteobacteria
Aeromonas schubertii [LPUO]
31968
31883
-
Leu
CAG
[ENA]
¡û
>W1710596139
FTMJ01000015
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
11795
11880
+
Leu
CAG
[ENA]
¡û
>W1710596141
FTMJ01000015
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
12058
12143
+
Leu
CAG
[ENA]
¡û
>W1710596142
FTMJ01000015
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
12184
12269
+
Leu
CAG
[ENA]
¡û
>W1710596143
FTMJ01000015
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
12310
12395
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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