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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158526 (26 seq.)
>W1711135107
LUYN01000127
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
303
380
+
Pro
GGG
[ENA]
¡û
>C171067772
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
2204742
2204819
+
Pro
GGG
-
¡û
>WENV180285637
OBID01584191
[OBID] metagenome; sludge
145
68
-
Pro
GGG
[ENA]
¢þ
>WENV181222579
OFDC01000015
[OFDC] hot springs metagenome; Water
220595
220672
+
Pro
GGG
[ENA]
¢þ
>WENV181227283
OFDN01005008
[OFDN] hot springs metagenome; Water
5744
5821
+
Pro
GGG
[ENA]
¢þ
>WENV183731361
PJTS01043567
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
115
38
-
Pro
GGG
[ENA]
¢þ
>WENV170713384
LNFM01029854
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
885
962
+
Pro
GGG
[ENA]
¢þ
>WENV170974423
MTKY01060952
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1946
1869
-
Pro
GGG
[ENA]
¢þ
>C181044820
CP020470
Alphaproteobacteria
Fuscovulum blasticum 28/5 [CP020470]
257648
257571
-
Pro
GGG
-
¡û
>C181169793
CP028918
Alphaproteobacteria
Gemmobacter aquarius HYN0069 [CP028918]
1656395
1656318
-
Pro
GGG
-
¡û
>C191123068
CP034328
Alphaproteobacteria
Tabrizicola piscis K13M18 [CP034328]
4157400
4157323
-
Pro
GGG
-
¡û
>C141006356
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
1075089
1075012
-
Pro
GGG
[Ensembl]
¡û
>W1910744011
MHZT01000046
Alphaproteobacteria
Rhodobacterales bacterium RIFCSPHIGHO2_02_FULL_62_130 [MHZT]
143405
143482
+
Pro
GGG
[ENA]
¡û
>W1910744063
MHZU01000047
Alphaproteobacteria
Rhodobacterales bacterium RIFCSPHIGHO2_12_FULL_62_75 [MHZU]
18347
18270
-
Pro
GGG
[ENA]
¡û
>W1911495101
OBMP01000002
Alphaproteobacteria
Rhodobacter sp. JA431 [OBMP]
306406
306483
+
Pro
GGG
[ENA]
¡û
>W1911581844
PGOI01000002
Alphaproteobacteria
Pseudorhodobacter sp. MZDSW-24AT [PGOI]
259328
259405
+
Pro
GGG
[ENA]
¡û
>W1911696794
QMJY01000083
Alphaproteobacteria
Tabrizicola thermarum YIM 73036 [QMJY]
363435
363512
+
Pro
GGG
[ENA]
¡û
>W1810173964
PJOM01000002
Alphaproteobacteria
Pseudotabrizicola formosa XJSP [PJOM]
898676
898753
+
Pro
GGG
[ENA]
¡û
>W1810174019
PJON01000001
Alphaproteobacteria
Tabrizicola aquatica RCRI19 [PJON]
622351
622274
-
Pro
GGG
[ENA]
¡û
>W1810444943
PZKE01000005
Alphaproteobacteria
Fuscovulum blasticum DSM 2131 [PZKE]
212205
212282
+
Pro
GGG
[ENA]
¡û
>W1810486240
QAXT01000001
Alphaproteobacteria
Rhodobacter aestuarii JA296 [QAXT]
248874
248951
+
Pro
GGG
[ENA]
¡û
>W1810707378
QNHG01000001
Alphaproteobacteria
Pseudogemmobacter bohemicus Cd-10 [QNHG]
508474
508397
-
Pro
GGG
[ENA]
¡û
>W1810721641
QNSD01000019
Alphaproteobacteria
Rhodobacter sp. 140A [QNSD]
54524
54601
+
Pro
GGG
[ENA]
¡û
>W1810917928
QWEY01000010
Alphaproteobacteria
Pseudotabrizicola alkalilacus DJC [QWEY]
64310
64387
+
Pro
GGG
[ENA]
¡û
>W1610946227
LUYN01000127
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
303
380
+
Pro
GGG
[ENA]
¡û
>W1710598803
FTOG01000001
Alphaproteobacteria
Rhodobacter aestuarii [FTOG]
436716
436639
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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