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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158627 (23 seq.)
>WENV180567641
OCLL01139740
[OCLL] human gut metagenome; human gut
107
183
+
Arg
CCT
[ENA]
¢þ
>WENV180710188
ODFM01000481
[ODFM] human metagenome; G_DNA_Stool
488
564
+
Arg
CCT
[ENA]
¢þ
>WENV180772108
ODIH01027209
[ODIH] human metagenome; G_DNA_Stool
293
369
+
Arg
CCT
[ENA]
¢þ
>WENV180829365
ODKA01136945
[ODKA] human metagenome; G_DNA_Stool
223
147
-
Arg
CCT
[ENA]
¢þ
>WENV180926433
ODTL01006048
[ODTL] human metagenome; G_DNA_Stool
2576
2652
+
Arg
CCT
[ENA]
¢þ
>WENV180963046
ODUN01057175
[ODUN] human metagenome; G_DNA_Stool
94
170
+
Arg
CCT
[ENA]
¢þ
>WENV180969651
ODUU01000478
[ODUU] human metagenome; G_DNA_Stool
76
152
+
Arg
CCT
[ENA]
¢þ
>WENV181053370
ODYI01000133
[ODYI] human metagenome; G_DNA_Stool
41386
41462
+
Arg
CCT
[ENA]
¢þ
>WENV181088228
OEBA01000667
[OEBA] human metagenome; G_DNA_Stool
688
764
+
Arg
CCT
[ENA]
¢þ
>WENV181099815
OECI01015338
[OECI] human metagenome; G_DNA_Stool
36
112
+
Arg
CCT
[ENA]
¢þ
>WENV181772386
OGRD01002255
[OGRD] human gut metagenome; faeces
2229
2305
+
Arg
CCT
[ENA]
¢þ
>WENV181783892
OGRL01015427
[OGRL] human gut metagenome; faeces
162
238
+
Arg
CCT
[ENA]
¢þ
>WENV181827265
OGUM01001293
[OGUM] human gut metagenome; faeces
18146
18070
-
Arg
CCT
[ENA]
¢þ
>WENV183046575
OLGF01000263
[OLGF] human gut metagenome; faeces
5421
5497
+
Arg
CCT
[ENA]
¢þ
>WENV183185353
OLPN01006302
[OLPN] human gut metagenome; faeces
994
918
-
Arg
CCT
[ENA]
¢þ
>WENV183324792
OLVY01052475
[OLVY] human gut metagenome; feces
289
213
-
Arg
CCT
[ENA]
¢þ
>WENV183332287
OLWD01000025
[OLWD] human gut metagenome; feces
45333
45257
-
Arg
CCT
[ENA]
¢þ
>WENV183344505
OLWQ01000500
[OLWQ] human gut metagenome; feces
76
152
+
Arg
CCT
[ENA]
¢þ
>WENV183349418
OLWW01000325
[OLWW] human gut metagenome; feces
76
152
+
Arg
CCT
[ENA]
¢þ
>WENV183468078
OMEE01000026
[OMEE] human gut metagenome; feces
5086
5010
-
Arg
CCT
[ENA]
¢þ
>WENV183487271
OMFW01000023
[OMFW] human gut metagenome; feces
9982
9906
-
Arg
CCT
[ENA]
¢þ
>WENV183487442
OMFX01000301
[OMFX] human gut metagenome; feces
1681
1605
-
Arg
CCT
[ENA]
¢þ
>WENV183789991
PPYF01393556
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2237
2313
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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