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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159029 (108 seq.)
>W1710862231
LMEF01000030
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
71606
71681
+
His
GTG
[ENA]
¡û
>W1710866914
LMHW01000010
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
954746
954821
+
His
GTG
[ENA]
¡û
>W1710868409
LMJB01000001
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
460966
460891
-
His
GTG
[ENA]
¡û
>W1710868879
LMJL01000008
Bacteroidota
Flavobacterium sp. Root935 [LMJL]
948141
948066
-
His
GTG
[ENA]
¡û
>W1710872502
LMMA01000023
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
424369
424294
-
His
GTG
[ENA]
¡û
>W1710892616
LNDX01000024
Bacteroidota
Flavobacteriaceae bacterium Ga0077528 [LNDX]
14488
14562
+
His
GTG
[ENA]
¡û
>W1711088281
LSYT01000004
Bacteroidota
Flavobacterium chilense [LSYT]
220673
220598
-
His
GTG
[ENA]
¡û
>W1711138921
LVEN01000035
Bacteroidota
Flavobacterium piscis [LVEN]
237410
237336
-
His
GTG
[ENA]
¡û
>W1711431896
MIKE01000023
Bacteroidota
Flavobacterium tructae spartansii [MIKE]
121322
121247
-
His
GTG
[ENA]
¡û
>W1711513088
MLFK01000013
Bacteroidota
Flavobacterium johnsoniae [MLFK]
209018
208943
-
His
GTG
[ENA]
¡û
>W1711743959
MUFW01000001
Bacteroidota
Flavobacterium sp. LM4 [MUFW]
1081295
1081370
+
His
GTG
[ENA]
¡û
>W1711744060
MUFX01000002
Bacteroidota
Flavobacterium sp. LM5 [MUFX]
8568
8493
-
His
GTG
[ENA]
¡û
>W1711748535
MULJ01000001
Bacteroidota
Flavobacterium sp. KBS0721 [MULJ]
441347
441272
-
His
GTG
[ENA]
¡û
>C171053199
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
3235073
3235148
+
His
GTG
-
¡û
>C171063319
CP017479
Bacteroidota
Flavobacterium gilvum EM1308 [CP017479]
2457062
2457137
+
His
GTG
-
¡û
>W131052318
AMYW01000007
Bacteroidota
Flavobacterium sp. WG21 [AMYW]
133253
133178
-
His
GTG
[ENA]
¡û
>W131225280
AUDL01000007
Bacteroidota
Flavobacterium denitrificans DSM 15936 [AUDL]
260437
260362
-
His
GTG
[ENA]
¡û
>W131226963
AUEU01000002
Bacteroidota
Flavobacterium sp. URHB0058 [AUEU]
162418
162343
-
His
GTG
[ENA]
¡û
>C009423
CP000685
Bacteroidota
Flavobacterium johnsoniae UW101 UW101; ATCC 17061 [CP000685]
5696509
5696434
-
His
GTG
[Ensembl]
¡û
>WENV180285770
OBID01693488
[OBID] metagenome; sludge
215
141
-
His
GTG
[ENA]
¢þ
>WENV181171691
OEIV010311600
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
276
202
-
His
GTG
[ENA]
¢þ
>WENV181384528
OFRI01002146
[OFRI] wastewater metagenome; Exp Tend VB 90WW
1087
1161
+
His
GTG
[ENA]
¢þ
>WENV181399214
OFSE01015731
[OFSE] wastewater metagenome; Exp Tend VB 50WW
543
469
-
His
GTG
[ENA]
¢þ
>W141289777
JARP01000006
Bacteroidota
Flavobacterium sp. KJJ [JARP]
72183
72258
+
His
GTG
[ENA]
¡û
>W141291520
JASY01000018
Bacteroidota
Flavobacterium chungangense LMG 26729 [JASY]
54227
54152
-
His
GTG
[ENA]
¡û
>W141291916
JATV01000002
Bacteroidota
Flavobacterium succinicans LMG 10402 [JATV]
22540
22465
-
His
GTG
[ENA]
¡û
>WENV183725649
PJQF01004874
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
779
853
+
His
GTG
[ENA]
¢þ
>WENV183726791
PJTO01000176
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
30744
30670
-
His
GTG
[ENA]
¢þ
>WENV183729383
PJTQ01031227
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
209
135
-
His
GTG
[ENA]
¢þ
>WENV183729874
PJTR01000141
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
48563
48637
+
His
GTG
[ENA]
¢þ
>WENV183730029
PJTR01000347
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
30974
30900
-
His
GTG
[ENA]
¢þ
>WENV183730585
PJTS01000155
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
45966
45892
-
His
GTG
[ENA]
¢þ
>WENV183731255
PJTS01027546
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
446
372
-
His
GTG
[ENA]
¢þ
>WENV183731548
PJTT01000019
[PJTT] soil metagenome; Soil (2) enriched on wood chips
357307
357233
-
His
GTG
[ENA]
¢þ
>WENV183734783
PJUA01000011
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
122716
122790
+
His
GTG
[ENA]
¢þ
>WENV183735882
PJUB01007691
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
791
717
-
His
GTG
[ENA]
¢þ
>WENV183736064
PJUC01000012
[PJUC] soil metagenome; Soil enriched on filter paper
122716
122790
+
His
GTG
[ENA]
¢þ
>WENV170641995
JFJP01038423
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4039
4113
+
His
GTG
[ENA]
¢þ
>WENV170710747
LNFM01002543
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
24056
23982
-
His
GTG
[ENA]
¢þ
>WENV171003945
NNBV01004854
[NNBV] plant metagenome; symbiotic tissue sample KVS11
154
228
+
His
GTG
[ENA]
¢þ
>C181176634
CP029255
Bacteroidota
Flavobacterium crocinum HYN0056 [CP029255]
5454408
5454334
-
His
GTG
-
¡û
>C181190996
CP030261
Bacteroidota
Flavobacterium fluviale HYN0086 [CP030261]
4501405
4501331
-
His
GTG
-
¡û
>C191025467
CP023642
Bacteroidota
Flavobacterium anhuiense M168 [CP023642]
3955195
3955121
-
His
GTG
-
¡û
>W09105493
AAPM01000013
Bacteroidota
Flavobacterium johnsoniae UW101 [AAPM]
119950
119875
-
His
GTG
[ENA]
¡û
>W141727216
JNCP01000088
Bacteroidota
Flavobacterium gilvum EM1308 [JNCP]
4834
4759
-
His
GTG
[ENA]
¡û
>W141809335
JPRL01000001
Bacteroidota
Flavobacterium reichenbachii [JPRL]
1642513
1642588
+
His
GTG
[ENA]
¡û
>W141816547
JQJY01000003
Bacteroidota
Flavobacterium sp. ASV13 Fl [JQJY]
245987
245912
-
His
GTG
[ENA]
¡û
>W1910547025
FZNL01000012
Bacteroidota
Flavobacterium sp. ov086 ov086 OV086 [FZNL]
44189
44263
+
His
GTG
[ENA]
¡û
>W1910577889
JUIV01000001
Bacteroidota
Flavobacterium anhuiense RCM74 [JUIV]
457745
457819
+
His
GTG
[ENA]
¡û
>W1910792771
MRCM01000005
Bacteroidota
Flavobacterium sp. ACN2 [MRCM]
60567
60493
-
His
GTG
[ENA]
¡û
>W1910792979
MRCQ01000002
Bacteroidota
Flavobacterium sp. ACN6 [MRCQ]
135765
135691
-
His
GTG
[ENA]
¡û
>W1910805340
MTQF01000004
Bacteroidota
[Flexibacter] sp. ATCC 35103 [MTQF]
341275
341201
-
His
GTG
[ENA]
¡û
>W1910808957
MUGT01000138
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
7017
7091
+
His
GTG
[ENA]
¡û
>W1910809103
MUGW01000030
Bacteroidota
Flavobacterium hercynium DSM 18292 [MUGW]
216
142
-
His
GTG
[ENA]
¡û
>W1910809248
MUGZ01000004
Bacteroidota
Flavobacterium johnsoniae UW101 ATCC 17061 [MUGZ]
90439
90365
-
His
GTG
[ENA]
¡û
>W1910809295
MUHA01000006
Bacteroidota
Flavobacterium oncorhynchi CCUG 59446 [MUHA]
131248
131322
+
His
GTG
[ENA]
¡û
>W1910809380
MUHB01000040
Bacteroidota
Flavobacterium pectinovorum ATCC 19366 [MUHB]
6257
6331
+
His
GTG
[ENA]
¡û
>W1910809411
MUHC01000033
Bacteroidota
Flavobacterium piscis CCUG 60099 [MUHC]
2859
2933
+
His
GTG
[ENA]
¡û
>W1910809461
MUHD01000027
Bacteroidota
Flavobacterium plurextorum CCUG 60112 [MUHD]
224221
224295
+
His
GTG
[ENA]
¡û
>W1910809532
MUHF01000002
Bacteroidota
Flavobacterium reichenbachii DSM 21791 [MUHF]
11409
11483
+
His
GTG
[ENA]
¡û
>W1910809624
MUHG01000036
Bacteroidota
Flavobacterium tructae ATCC BAA-2541 [MUHG]
715
641
-
His
GTG
[ENA]
¡û
>W1910809671
MUHH01000038
Bacteroidota
Flavobacterium tructae CCUG 60100 [MUHH]
30449
30523
+
His
GTG
[ENA]
¡û
>W1911180831
NQOT01000408
Bacteroidota
Flavobacterium sp. IR1 [NQOT]
81920
81846
-
His
GTG
[ENA]
¡û
>W1911218541
NRQU01000025
Bacteroidota
Flavobacterium sp. YO12 [NRQU]
15480
15554
+
His
GTG
[ENA]
¡û
>W1911218590
NRQV01000014
Bacteroidota
Flavobacterium sp. YO64 [NRQV]
49887
49813
-
His
GTG
[ENA]
¡û
>W1911564287
PCMW01000043
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
31665
31591
-
His
GTG
[ENA]
¡û
>W1911747549
QWDM01000007
Bacteroidota
Flavobacterium cupreum CCM 8825 [QWDM]
23202
23276
+
His
GTG
[ENA]
¡û
>W1810071583
PEEU01000001
Bacteroidota
Flavobacterium sp. 9 [PEEU]
1419643
1419569
-
His
GTG
[ENA]
¡û
>W1810072034
PEFC01000001
Bacteroidota
Flavobacterium sp. 2 [PEFC]
2646284
2646210
-
His
GTG
[ENA]
¡û
>W1810530639
QCWV01000073
Bacteroidota
Flavobacterium sp. WLB [QCWV]
4840
4766
-
His
GTG
[ENA]
¡û
>W1810580543
QETH01000002
Bacteroidota
Flavobacterium sp. HTF [QETH]
130776
130702
-
His
GTG
[ENA]
¡û
>W1810657132
QJGZ01000042
Bacteroidota
Flavobacterium sharifuzzamanii A7.6 [QJGZ]
213009
212935
-
His
GTG
[ENA]
¡û
>W1810657728
QJHK01000001
Bacteroidota
Flavobacterium cheongpyeongense IMCC34759 [QJHK]
430345
430419
+
His
GTG
[ENA]
¡û
>W1810657779
QJHL01000001
Bacteroidota
Flavobacterium hydrophilum IMCC34758 [QJHL]
390833
390907
+
His
GTG
[ENA]
¡û
>W1810669710
QJRH01000068
Bacteroidota
Flavobacterium tistrianum GB 56.1 [QJRH]
190290
190216
-
His
GTG
[ENA]
¡û
>W1810669760
QJRI01000180
Bacteroidota
Flavobacterium nitrogenifigens NXU-44 [QJRI]
133208
133282
+
His
GTG
[ENA]
¡û
>W1810669795
QJRJ01000073
Bacteroidota
Flavobacterium ginsenosidimutans THG 01 [QJRJ]
233752
233678
-
His
GTG
[ENA]
¡û
>W1810672649
QJTO01000003
Bacteroidota
Flavobacterium sp. GV069 [QJTO]
286050
286124
+
His
GTG
[ENA]
¡û
>W1810676042
QKLS01000003
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
286049
286123
+
His
GTG
[ENA]
¡û
>W1810787318
QRDQ01000009
Bacteroidota
Flavobacterium cutihirudinis DSM 25795 [QRDQ]
455717
455643
-
His
GTG
[ENA]
¡û
>W1810861173
QTTR01000004
Bacteroidota
Flavobacterium sp. GV028 [QTTR]
177254
177180
-
His
GTG
[ENA]
¡û
>W1511508960
JXQR01000005
Bacteroidota
Flavobacterium sp. MEB061 [JXQR]
120362
120287
-
His
GTG
[ENA]
¡û
>W121086538
AKJZ01000084
Bacteroidota
Flavobacterium sp. CF136 [AKJZ]
16249
16174
-
His
GTG
[ENA]
¡û
>W121103545
AKZQ01000037
Bacteroidota
Flavobacterium sp. F52 [AKZQ]
436546
436621
+
His
GTG
[ENA]
¡û
>W1610521459
JMTM01000035
Bacteroidota
Flavobacterium succinicans [JMTM]
260401
260326
-
His
GTG
[ENA]
¡û
>W1610534883
JRLF01000012
Bacteroidota
Flavobacterium aquidurense [JRLF]
459611
459686
+
His
GTG
[ENA]
¡û
>W1610724577
LMEF01000030
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
71606
71681
+
His
GTG
[ENA]
¡û
>W1610729260
LMHW01000010
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
954746
954821
+
His
GTG
[ENA]
¡û
>W1610730755
LMJB01000001
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
460966
460891
-
His
GTG
[ENA]
¡û
>W1610731225
LMJL01000008
Bacteroidota
Flavobacterium sp. Root935 [LMJL]
948141
948066
-
His
GTG
[ENA]
¡û
>W1610734848
LMMA01000023
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
424369
424294
-
His
GTG
[ENA]
¡û
>W1610752882
LNDX01000024
Bacteroidota
Flavobacteriaceae bacterium Ga0077528 [LNDX]
14488
14562
+
His
GTG
[ENA]
¡û
>W1610922820
LSYT01000004
Bacteroidota
Flavobacterium chilense [LSYT]
220673
220598
-
His
GTG
[ENA]
¡û
>W1610949929
LVEN01000035
Bacteroidota
Flavobacterium piscis [LVEN]
237410
237336
-
His
GTG
[ENA]
¡û
>W1710507239
FMVC01000004
Bacteroidota
Flavobacterium anhuiense [FMVC]
199851
199776
-
His
GTG
[ENA]
¡û
>W1710548006
FODK01000002
Bacteroidota
Flavobacterium sp. fv08 [FODK]
403109
403184
+
His
GTG
[ENA]
¡û
>W1710558989
FOMH01000003
Bacteroidota
Flavobacterium phragmitis [FOMH]
106380
106305
-
His
GTG
[ENA]
¡û
>W1710569845
FOUT01000002
Bacteroidota
Flavobacterium succinicans [FOUT]
311192
311267
+
His
GTG
[ENA]
¡û
>W1710585114
FQWC01000005
Bacteroidota
Flavobacterium defluvii [FQWC]
263320
263245
-
His
GTG
[ENA]
¡û
>W1710585335
FQWH01000002
Bacteroidota
Flavobacterium johnsoniae [FQWH]
257477
257402
-
His
GTG
[ENA]
¡û
>W1710586057
FQWW01000003
Bacteroidota
Flavobacterium sp. CF108 [FQWW]
402917
402992
+
His
GTG
[ENA]
¡û
>W1710589919
FRAO01000003
Bacteroidota
Flavobacterium johnsoniae [FRAO]
424704
424779
+
His
GTG
[ENA]
¡û
>W1710591509
FRBT01000005
Bacteroidota
Flavobacterium chilense [FRBT]
188727
188802
+
His
GTG
[ENA]
¡û
>W1710591687
FRBX01000003
Bacteroidota
Flavobacterium pectinovorum [FRBX]
319749
319674
-
His
GTG
[ENA]
¡û
>W1710591736
FRBY01000003
Bacteroidota
Flavobacterium saccharophilum [FRBY]
348151
348076
-
His
GTG
[ENA]
¡û
>W1710620407
JMTM01000035
Bacteroidota
Flavobacterium succinicans [JMTM]
260401
260326
-
His
GTG
[ENA]
¡û
>W1710637119
JRLF01000012
Bacteroidota
Flavobacterium aquidurense [JRLF]
459611
459686
+
His
GTG
[ENA]
¡û
>W1710756356
LIAC01000018
Bacteroidota
Flavobacterium sp. NLM [LIAC]
28469
28394
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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