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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.15911 (94 seq.)
>W1711004479
LQIU01000012
Actinomycetota
Mycobacterium sp. IS-1496 [LQIU]
82850
82941
+
Ser
GCT
[ENA]
¡û
>W1711004542
LQIV01000017
Actinomycetota
Mycobacterium sp. IS-1742 [LQIV]
32506
32597
+
Ser
GCT
[ENA]
¡û
>W1711006456
LQOJ01000036
Actinomycetota
Mycolicibacterium fallax [LQOJ]
15847
15756
-
Ser
GCT
[ENA]
¡û
>W1711006573
LQOL01000050
Actinomycetota
Mycolicibacterium canariasense [LQOL]
31837
31928
+
Ser
GCT
[ENA]
¡û
>W1711008542
LQQB01000094
Actinomycetota
Mycobacterium xenopi [LQQB]
31776
31685
-
Ser
GCT
[ENA]
¡û
>W1711049703
LRQY01000021
Actinomycetota
Prescottella equi [LRQY]
29708
29799
+
Ser
GCT
[ENA]
¡û
>W1711049748
LRQZ01000039
Actinomycetota
Prescottella equi [LRQZ]
33738
33829
+
Ser
GCT
[ENA]
¡û
>W1711171857
LWBN01000002
Actinomycetota
Prescottella equi [LWBN]
33812
33903
+
Ser
GCT
[ENA]
¡û
>W1711179664
LWHU01000010
Actinomycetota
Prescottella equi [LWHU]
31585
31676
+
Ser
GCT
[ENA]
¡û
>W1711179761
LWHW01000006
Actinomycetota
Prescottella equi [LWHW]
32987
33078
+
Ser
GCT
[ENA]
¡û
>W1711179818
LWHX01000009
Actinomycetota
Prescottella equi [LWHX]
33795
33886
+
Ser
GCT
[ENA]
¡û
>W1711179872
LWHY01000007
Actinomycetota
Prescottella equi [LWHY]
82620
82711
+
Ser
GCT
[ENA]
¡û
>W1711179915
LWHZ01000007
Actinomycetota
Prescottella equi [LWHZ]
29816
29907
+
Ser
GCT
[ENA]
¡û
>W1711179975
LWIA01000005
Actinomycetota
Prescottella equi [LWIA]
32987
33078
+
Ser
GCT
[ENA]
¡û
>W1711180024
LWIB01000011
Actinomycetota
Prescottella equi [LWIB]
165852
165761
-
Ser
GCT
[ENA]
¡û
>W1711180082
LWIC01000010
Actinomycetota
Prescottella equi [LWIC]
33795
33886
+
Ser
GCT
[ENA]
¡û
>W1711192227
LWTO01000011
Actinomycetota
Prescottella equi [LWTO]
33797
33888
+
Ser
GCT
[ENA]
¡û
>W1711192284
LWTP01000008
Actinomycetota
Prescottella equi [LWTP]
31569
31660
+
Ser
GCT
[ENA]
¡û
>W1711192493
LWTT01000013
Actinomycetota
Prescottella equi [LWTT]
31569
31660
+
Ser
GCT
[ENA]
¡û
>W1711192518
LWTU01000004
Actinomycetota
Prescottella equi [LWTU]
31588
31679
+
Ser
GCT
[ENA]
¡û
>W1711192645
LWTW01000011
Actinomycetota
Prescottella equi [LWTW]
12955
12864
-
Ser
GCT
[ENA]
¡û
>W1711192695
LWTX01000009
Actinomycetota
Prescottella equi [LWTX]
33795
33886
+
Ser
GCT
[ENA]
¡û
>W1711192746
LWTY01000008
Actinomycetota
Prescottella equi [LWTY]
31585
31676
+
Ser
GCT
[ENA]
¡û
>W1711207216
LXFG01000009
Actinomycetota
Prescottella equi [LXFG]
162960
162869
-
Ser
GCT
[ENA]
¡û
>W1711207267
LXFH01000011
Actinomycetota
Prescottella equi [LXFH]
62885
62976
+
Ser
GCT
[ENA]
¡û
>W1711207322
LXFI01000008
Actinomycetota
Prescottella equi [LXFI]
146706
146615
-
Ser
GCT
[ENA]
¡û
>W1711280111
LZLC01000075
Actinomycetota
Mycolicibacterium mucogenicum [LZLC]
4917
4826
-
Ser
GCT
[ENA]
¡û
>W1711285345
LZSF01000159
Actinomycetota
Mycolicibacterium mucogenicum [LZSF]
2022
1931
-
Ser
GCT
[ENA]
¡û
>W1711285674
LZSL01000093
Actinomycetota
Mycolicibacterium setense [LZSL]
29190
29281
+
Ser
GCT
[ENA]
¡û
>W131252540
CBMO010000002
Actinomycetota
Mycolicibacterium septicum DSM 44393 [CBMO]
33464
33373
-
Ser
GCT
[ENA]
¡û
>W1711772854
MVHS01000047
Actinomycetota
Mycolicibacterium insubricum [MVHS]
3250
3159
-
Ser
GCT
[ENA]
¡û
>W1711773218
MVIA01000021
Actinomycetota
Mycolicibacterium monacense DSM 44395 [MVIA]
29542
29633
+
Ser
GCT
[ENA]
¡û
>W1711773506
MVIH01000016
Actinomycetota
Mycolicibacterium rhodesiae [MVIH]
37024
36933
-
Ser
GCT
[ENA]
¡û
>W1711783488
MVOC01000073
Actinomycetota
Mycobacterium sp. AT1 [MVOC]
60593
60502
-
Ser
GCT
[ENA]
¡û
>W1711961933
NCSV01000057
Actinomycetota
Mycolicibacterium peregrinum [NCSV]
42943
42852
-
Ser
GCT
[ENA]
¡û
>C171071860
CP018043
Actinomycetota
Mycobacterium sp. WY10 [CP018043]
4831111
4831202
+
Ser
GCT
-
¡û
>W131099119
AOSR01000055
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
3148
3057
-
Ser
GCT
[ENA]
¡û
>W131226781
AUEQ01000009
Actinomycetota
Mycobacterium sp. URHD0025 [AUEQ]
459170
459079
-
Ser
GCT
[ENA]
¡û
>C014450
CP000511
Actinomycetota
Mycolicibacterium vanbaalenii PYR-1 [CP000511]
5988647
5988559
-
Ser
GCT
[Ensembl]
¡û
>C014607
CP000518
Actinomycetota
Mycobacterium sp. KMS [CP000518]
5307765
5307674
-
Ser
GCT
[Ensembl]
¡û
>WENV180095936
MTBK01099241
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1794
1704
-
Ser
GCT
[ENA]
¢þ
>WENV180096602
MTBK01137969
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
8312
8222
-
Ser
GCT
[ENA]
¢þ
>WENV180304186
OBJH01100282
[OBJH] soil metagenome; soil
130
39
-
Ser
GCT
[ENA]
¢þ
>WENV180304384
OBJI01017366
[OBJI] soil metagenome; soil
99
8
-
Ser
GCT
[ENA]
¢þ
>WENV180344561
OBLL01042611
[OBLL] soil metagenome; soil
155
246
+
Ser
GCT
[ENA]
¢þ
>WENV180345112
OBLM01038795
[OBLM] soil metagenome; soil
115
206
+
Ser
GCT
[ENA]
¢þ
>W141063587
APJC01000007
Actinomycetota
Prescottella equi NBRC 101255 = C 7 [APJC]
33741
33832
+
Ser
GCT
[ENA]
¡û
>W141089901
AUWP01000059
Actinomycetota
Mycobacterium sp. UM_RHS [AUWP]
33531
33622
+
Ser
GCT
[ENA]
¡û
>WENV181170023
OEIV010020077
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
788
879
+
Ser
GCT
[ENA]
¢þ
>W141262026
CCBF010000001
Actinomycetota
Mycolicibacterium mageritense [CCBF]
2665079
2665170
+
Ser
GCT
[ENA]
¡û
>C181017380
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
406087
406178
+
Ser
GCT
-
¡û
>C181081415
CP023435
Actinomycetota
Mycobacterium sp. PYR15 [CP023435]
5710312
5710222
-
Ser
GCT
-
¡û
>C181107034
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
367779
367870
+
Ser
GCT
-
¡û
>C181160008
CP027793
Actinomycetota
Prescottella equi DSSKP-R-001 [CP027793]
303035
303126
+
Ser
GCT
-
¡û
>W09105500
AAPW01000001
Actinomycetota
Mycobacterium sp. MCS [AAPW]
354917
355008
+
Ser
GCT
[ENA]
¡û
>W09105620
AAQC01000003
Actinomycetota
Mycobacterium sp. JLS [AAQC]
172492
172401
-
Ser
GCT
[ENA]
¡û
>W09105643
AAQD01000002
Actinomycetota
Mycobacterium sp. KMS [AAQD]
374592
374683
+
Ser
GCT
[ENA]
¡û
>C191139056
CP035319
Actinomycetota
Rhodococcus sp. ABRD24 [CP035319]
2993248
2993339
+
Ser
GCT
-
¡û
>W141564571
JIAW01000014
Actinomycetota
Mycobacterium sp. URHB0044 [JIAW]
150997
151088
+
Ser
GCT
[ENA]
¡û
>W141702419
JMLM01000003
Actinomycetota
Mycobacterium sp. UNC410CL29Cvi84 [JMLM]
304351
304260
-
Ser
GCT
[ENA]
¡û
>W1910128448
BHVW01000109
Actinomycetota
Mycolicibacterium sp. NCC-Tsukiji NCC Tsukiji [BHVW]
32405
32496
+
Ser
GCT
[ENA]
¡û
>W1910370918
FUEZ01000004
Actinomycetota
Mycobacterium numidiamassiliense AB215 [FUEZ]
318782
318871
+
Ser
GCT
[ENA]
¡û
>W1910370965
FUFA01000004
Actinomycetota
Mycobacterium rhizamassiliense AB57 [FUFA]
89828
89917
+
Ser
GCT
[ENA]
¡û
>W1911278997
NTGA01000004
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
180091
180182
+
Ser
GCT
[ENA]
¡û
>W1810338751
PUTU01001240
Actinomycetota
Mycolicibacterium austroafricanum ITM-2016-00315 [PUTU]
46519
46608
+
Ser
GCT
[ENA]
¡û
>W1810463941
PZZY01000004
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
343386
343477
+
Ser
GCT
[ENA]
¡û
>W1810487035
QAYH01000001
Actinomycetota
Mycobacterium sp. YR782 [QAYH]
748374
748284
-
Ser
GCT
[ENA]
¡û
>W1810762992
QQAT01000024
Actinomycetota
Rhodococcus sp. AG1013 [QQAT]
12939
13030
+
Ser
GCT
[ENA]
¡û
>W1510669552
CWKH01000002
Actinomycetota
Mycolicibacterium neworleansense type strain: ATCC 49404 [CWKH]
1408481
1408572
+
Ser
GCT
[ENA]
¡û
>W1510755036
CYSH01000007
Actinomycetota
Mycolicibacterium peregrinum CSUR P2098 [CYSH]
2323741
2323650
-
Ser
GCT
[ENA]
¡û
>W1510755072
CYSI01000007
Actinomycetota
Mycolicibacterium mucogenicum CSUR P2099 [CYSI]
3406192
3406283
+
Ser
GCT
[ENA]
¡û
>W1511404193
JTLZ01000012
Actinomycetota
Mycolicibacterium setense Manresensis [JTLZ]
572895
572804
-
Ser
GCT
[ENA]
¡û
>C121015969
FN563149
Actinomycetota
Prescottella equi 103S [FN563149]
293022
293113
+
Ser
GCT
[Ensembl]
¡û
>C161100469
CP016640
Actinomycetota
Mycobacterium sp. djl-10 [CP016640]
206870
206961
+
Ser
GCT
[Ensembl]
¡û
>W121010627
AGJJ01000004
Actinomycetota
Mycolicibacterium tusciae JS617 [AGJJ]
320236
320327
+
Ser
GCT
[ENA]
¡û
>W1610051153
BBGO01000727
Actinomycetota
Mycolicibacterium hodleri JCM 12141 [BBGO]
636
545
-
Ser
GCT
[ENA]
¡û
>W1610082633
BDGK01000001
Actinomycetota
Rhodococcus sp. Br-6 [BDGK]
51859
51950
+
Ser
GCT
[ENA]
¡û
>W1610597705
LFFF01000050
Actinomycetota
Actinobacteria bacterium casp-actino6 [LFFF]
10215
10124
-
Ser
GCT
[ENA]
¡û
>W1610855073
LQIU01000012
Actinomycetota
Mycobacterium sp. IS-1496 [LQIU]
82850
82941
+
Ser
GCT
[ENA]
¡û
>W1610855136
LQIV01000017
Actinomycetota
Mycobacterium sp. IS-1742 [LQIV]
32506
32597
+
Ser
GCT
[ENA]
¡û
>W1610890832
LRQY01000021
Actinomycetota
Prescottella equi [LRQY]
29708
29799
+
Ser
GCT
[ENA]
¡û
>W1610890877
LRQZ01000039
Actinomycetota
Prescottella equi [LRQZ]
33738
33829
+
Ser
GCT
[ENA]
¡û
>W1611039396
LZLC01000075
Actinomycetota
Mycolicibacterium mucogenicum [LZLC]
4917
4826
-
Ser
GCT
[ENA]
¡û
>W1611042906
LZSF01000159
Actinomycetota
Mycolicibacterium mucogenicum [LZSF]
2022
1931
-
Ser
GCT
[ENA]
¡û
>W1611043235
LZSL01000093
Actinomycetota
Mycolicibacterium setense [LZSL]
29190
29281
+
Ser
GCT
[ENA]
¡û
>W1611043353
LZSO01000014
Actinomycetota
Mycolicibacterium peregrinum [LZSO]
90295
90386
+
Ser
GCT
[ENA]
¡û
>W1611063039
MBEG01000044
Actinomycetota
Mycolicibacterium vulneris [MBEG]
92876
92967
+
Ser
GCT
[ENA]
¡û
>W1710047552
BBGO01000727
Actinomycetota
Mycolicibacterium hodleri JCM 12141 [BBGO]
636
545
-
Ser
GCT
[ENA]
¡û
>W1710081807
BDGK01000001
Actinomycetota
Rhodococcus sp. Br-6 [BDGK]
51859
51950
+
Ser
GCT
[ENA]
¡û
>W1710083023
BDIV01000007
Actinomycetota
Rhodococcus sp. Br-6 [BDIV]
51876
51967
+
Ser
GCT
[ENA]
¡û
>W1710533408
FNRC01000004
Actinomycetota
Mycobacterium sp. 283mftsu [FNRC]
195150
195241
+
Ser
GCT
[ENA]
¡û
>W1710550233
FOFC01000004
Actinomycetota
Mycobacterium sp. 88mf [FOFC]
560288
560379
+
Ser
GCT
[ENA]
¡û
>W1710619933
JMHT01000018
Actinomycetota
Mycobacterium sp. ST-F2 [JMHT]
31456
31547
+
Ser
GCT
[ENA]
¡û
>W1710718952
LFFF01000050
Actinomycetota
Actinobacteria bacterium casp-actino6 [LFFF]
10215
10124
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK