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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159146 (114 seq.)
>W1710857564
LMAJ01000007
Bacteroidota
Flavobacteriaceae bacterium CRH [LMAJ]
42450
42526
+
Arg
TCG
[ENA]
¡û
>W1710862237
LMEF01000031
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
73409
73485
+
Arg
TCG
[ENA]
¡û
>W1710866928
LMHW01000012
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
181353
181427
+
Arg
TCG
[ENA]
¡û
>W1710868433
LMJB01000008
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
182192
182268
+
Arg
TCG
[ENA]
¡û
>W1710868889
LMJL01000010
Bacteroidota
Flavobacterium sp. Root935 [LMJL]
221354
221278
-
Arg
TCG
[ENA]
¡û
>W1710872490
LMMA01000006
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
149842
149766
-
Arg
TCG
[ENA]
¡û
>W1711088297
LSYT01000008
Bacteroidota
Flavobacterium chilense [LSYT]
189571
189647
+
Arg
TCG
[ENA]
¡û
>W1711138953
LVEN01000050
Bacteroidota
Flavobacterium piscis [LVEN]
182774
182850
+
Arg
TCG
[ENA]
¡û
>W1711385079
MEDR01000130
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
3596
3672
+
Arg
TCG
[ENA]
¡û
>W1711431919
MIKE01000028
Bacteroidota
Flavobacterium tructae spartansii [MIKE]
96665
96741
+
Arg
TCG
[ENA]
¡û
>W1711503298
MKTM01000005
Bacteroidota
Flavobacterium sp. 40-81 [MKTM]
70812
70736
-
Arg
TCG
[ENA]
¡û
>W1711513071
MLFK01000006
Bacteroidota
Flavobacterium johnsoniae [MLFK]
180876
180952
+
Arg
TCG
[ENA]
¡û
>W1711748572
MULJ01000006
Bacteroidota
Flavobacterium sp. KBS0721 [MULJ]
211589
211513
-
Arg
TCG
[ENA]
¡û
>C171053229
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
939096
939020
-
Arg
TCG
-
¡û
>C171063313
CP017479
Bacteroidota
Flavobacterium gilvum EM1308 [CP017479]
1693901
1693975
+
Arg
TCG
-
¡û
>W131052327
AMYW01000016
Bacteroidota
Flavobacterium sp. WG21 [AMYW]
72017
71943
-
Arg
TCG
[ENA]
¡û
>W131225298
AUDL01000009
Bacteroidota
Flavobacterium denitrificans DSM 15936 [AUDL]
229320
229244
-
Arg
TCG
[ENA]
¡û
>W131226987
AUEU01000009
Bacteroidota
Flavobacterium sp. URHB0058 [AUEU]
186725
186801
+
Arg
TCG
[ENA]
¡û
>C009404
CP000685
Bacteroidota
Flavobacterium johnsoniae UW101 UW101; ATCC 17061 [CP000685]
2099953
2100026
+
Arg
TCG
[Ensembl]
¡û
>W141093435
AVBI01000014
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
353569
353645
+
Arg
TCG
[ENA]
¡û
>W141094585
AVCS01000009
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
279381
279457
+
Arg
TCG
[ENA]
¡û
>W141096665
AVFO01000002
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
284552
284476
-
Arg
TCG
[ENA]
¡û
>W141097113
AVGG01000002
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
244933
244857
-
Arg
TCG
[ENA]
¡û
>WENV181399121
OFSE01011249
[OFSE] wastewater metagenome; Exp Tend VB 50WW
1411
1485
+
Arg
TCG
[ENA]
¢þ
>W141289785
JARP01000007
Bacteroidota
Flavobacterium sp. KJJ [JARP]
173665
173741
+
Arg
TCG
[ENA]
¡û
>WENV183726776
PJTO01000157
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
21307
21381
+
Arg
TCG
[ENA]
¢þ
>WENV183730043
PJTR01000403
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
5941
6015
+
Arg
TCG
[ENA]
¢þ
>WENV183730657
PJTS01000273
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
16961
17035
+
Arg
TCG
[ENA]
¢þ
>WENV183731072
PJTS01006861
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
1631
1557
-
Arg
TCG
[ENA]
¢þ
>WENV183731642
PJTT01000075
[PJTT] soil metagenome; Soil (2) enriched on wood chips
166806
166732
-
Arg
TCG
[ENA]
¢þ
>WENV183734972
PJUA01000299
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
22888
22962
+
Arg
TCG
[ENA]
¢þ
>WENV183735870
PJUB01006825
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
1056
982
-
Arg
TCG
[ENA]
¢þ
>WENV183736155
PJUC01000061
[PJUC] soil metagenome; Soil enriched on filter paper
22888
22962
+
Arg
TCG
[ENA]
¢þ
>WENV171003793
NNBV01000869
[NNBV] plant metagenome; symbiotic tissue sample KVS11
558
484
-
Arg
TCG
[ENA]
¢þ
>C181176618
CP029255
Bacteroidota
Flavobacterium crocinum HYN0056 [CP029255]
2070994
2071068
+
Arg
TCG
-
¡û
>C181190985
CP030261
Bacteroidota
Flavobacterium fluviale HYN0086 [CP030261]
1903811
1903885
+
Arg
TCG
-
¡û
>C191025445
CP023642
Bacteroidota
Flavobacterium anhuiense M168 [CP023642]
873492
873566
+
Arg
TCG
-
¡û
>C191155221
CP037933
Bacteroidota
Flavobacterium nackdongense GS13 [CP037933]
1866120
1866194
+
Arg
TCG
-
¡û
>W141727206
JNCP01000044
Bacteroidota
Flavobacterium gilvum EM1308 [JNCP]
37540
37614
+
Arg
TCG
[ENA]
¡û
>W09105481
AAPM01000007
Bacteroidota
Flavobacterium johnsoniae UW101 [AAPM]
205043
204969
-
Arg
TCG
[ENA]
¡û
>W141809358
JPRL01000001
Bacteroidota
Flavobacterium reichenbachii [JPRL]
3184772
3184696
-
Arg
TCG
[ENA]
¡û
>W141809359
JPRL01000001
Bacteroidota
Flavobacterium reichenbachii [JPRL]
3182069
3181993
-
Arg
TCG
[ENA]
¡û
>W141816572
JQJY01000009
Bacteroidota
Flavobacterium sp. ASV13 Fl [JQJY]
182103
182179
+
Arg
TCG
[ENA]
¡û
>W1910547040
FZNL01000019
Bacteroidota
Flavobacterium sp. ov086 ov086 OV086 [FZNL]
94787
94713
-
Arg
TCG
[ENA]
¡û
>W1910577908
JUIV01000003
Bacteroidota
Flavobacterium anhuiense RCM74 [JUIV]
279717
279643
-
Arg
TCG
[ENA]
¡û
>W1910792760
MRCM01000004
Bacteroidota
Flavobacterium sp. ACN2 [MRCM]
89716
89790
+
Arg
TCG
[ENA]
¡û
>W1910793002
MRCQ01000007
Bacteroidota
Flavobacterium sp. ACN6 [MRCQ]
184999
185073
+
Arg
TCG
[ENA]
¡û
>W1910805348
MTQF01000005
Bacteroidota
[Flexibacter] sp. ATCC 35103 [MTQF]
455447
455521
+
Arg
TCG
[ENA]
¡û
>W1910808838
MUGR01000015
Bacteroidota
Flavobacterium aquidurense DSM 18293 [MUGR]
410
335
-
Arg
TCG
[ENA]
¡û
>W1910808912
MUGS01000051
Bacteroidota
Flavobacterium araucananum DSM 24704 [MUGS]
84915
84841
-
Arg
TCG
[ENA]
¡û
>W1910809039
MUGV01000016
Bacteroidota
Flavobacterium frigidimaris DSM 15937 [MUGV]
59588
59514
-
Arg
TCG
[ENA]
¡û
>W1910809080
MUGW01000002
Bacteroidota
Flavobacterium hercynium DSM 18292 [MUGW]
75149
75075
-
Arg
TCG
[ENA]
¡û
>W1910809139
MUGX01000010
Bacteroidota
Flavobacterium hibernum ATCC 51468 [MUGX]
138263
138189
-
Arg
TCG
[ENA]
¡û
>W1910809239
MUGZ01000002
Bacteroidota
Flavobacterium johnsoniae UW101 ATCC 17061 [MUGZ]
122915
122841
-
Arg
TCG
[ENA]
¡û
>W1910809327
MUHA01000022
Bacteroidota
Flavobacterium oncorhynchi CCUG 59446 [MUHA]
655
581
-
Arg
TCG
[ENA]
¡û
>W1910809356
MUHB01000007
Bacteroidota
Flavobacterium pectinovorum ATCC 19366 [MUHB]
807357
807431
+
Arg
TCG
[ENA]
¡û
>W1910809390
MUHC01000010
Bacteroidota
Flavobacterium piscis CCUG 60099 [MUHC]
80670
80744
+
Arg
TCG
[ENA]
¡û
>W1910809458
MUHD01000021
Bacteroidota
Flavobacterium plurextorum CCUG 60112 [MUHD]
94664
94738
+
Arg
TCG
[ENA]
¡û
>W1910809527
MUHF01000001
Bacteroidota
Flavobacterium reichenbachii DSM 21791 [MUHF]
335967
336041
+
Arg
TCG
[ENA]
¡û
>W1910809528
MUHF01000001
Bacteroidota
Flavobacterium reichenbachii DSM 21791 [MUHF]
338670
338744
+
Arg
TCG
[ENA]
¡û
>W1910809598
MUHG01000017
Bacteroidota
Flavobacterium tructae ATCC BAA-2541 [MUHG]
288395
288321
-
Arg
TCG
[ENA]
¡û
>W1910809670
MUHH01000032
Bacteroidota
Flavobacterium tructae CCUG 60100 [MUHH]
64887
64813
-
Arg
TCG
[ENA]
¡û
>W1911180876
NQOT01001022
Bacteroidota
Flavobacterium sp. IR1 [NQOT]
63586
63512
-
Arg
TCG
[ENA]
¡û
>W1911218536
NRQU01000020
Bacteroidota
Flavobacterium sp. YO12 [NRQU]
43274
43200
-
Arg
TCG
[ENA]
¡û
>W1911218603
NRQV01000020
Bacteroidota
Flavobacterium sp. YO64 [NRQV]
45031
44957
-
Arg
TCG
[ENA]
¡û
>W1810071546
PEEU01000001
Bacteroidota
Flavobacterium sp. 9 [PEEU]
4124766
4124840
+
Arg
TCG
[ENA]
¡û
>W1810072054
PEFC01000002
Bacteroidota
Flavobacterium sp. 2 [PEFC]
1107275
1107201
-
Arg
TCG
[ENA]
¡û
>W1810475400
QAIZ01000898
Bacteroidota
Flavobacterium sp. HMWF030 [QAIZ]
353
279
-
Arg
TCG
[ENA]
¡û
>W1810577023
QENX01000001
Bacteroidota
Flavobacterium sp. 103 [QENX]
1167735
1167661
-
Arg
TCG
[ENA]
¡û
>W1810580563
QETH01000028
Bacteroidota
Flavobacterium sp. HTF [QETH]
9621
9547
-
Arg
TCG
[ENA]
¡û
>W1810596045
QGGJ01000001
Bacteroidota
Flavobacterium araucananum DSM 24704 [QGGJ]
1598909
1598983
+
Arg
TCG
[ENA]
¡û
>W1810657098
QJGZ01000031
Bacteroidota
Flavobacterium sharifuzzamanii A7.6 [QJGZ]
87837
87911
+
Arg
TCG
[ENA]
¡û
>W1810657742
QJHK01000006
Bacteroidota
Flavobacterium cheongpyeongense IMCC34759 [QJHK]
108630
108704
+
Arg
TCG
[ENA]
¡û
>W1810657819
QJHL01000009
Bacteroidota
Flavobacterium hydrophilum IMCC34758 [QJHL]
109233
109307
+
Arg
TCG
[ENA]
¡û
>W1810669705
QJRH01000065
Bacteroidota
Flavobacterium tistrianum GB 56.1 [QJRH]
170308
170382
+
Arg
TCG
[ENA]
¡û
>W1810669742
QJRI01000172
Bacteroidota
Flavobacterium nitrogenifigens NXU-44 [QJRI]
43982
44056
+
Arg
TCG
[ENA]
¡û
>W1810669792
QJRJ01000070
Bacteroidota
Flavobacterium ginsenosidimutans THG 01 [QJRJ]
89566
89640
+
Arg
TCG
[ENA]
¡û
>W1810672663
QJTO01000008
Bacteroidota
Flavobacterium sp. GV069 [QJTO]
189174
189248
+
Arg
TCG
[ENA]
¡û
>W1810676056
QKLS01000009
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
189174
189248
+
Arg
TCG
[ENA]
¡û
>W1810684401
QKXH01000005
Bacteroidota
Flavobacterium aquariorum IMCC34762 [QKXH]
224120
224194
+
Arg
TCG
[ENA]
¡û
>W1810787328
QRDQ01000011
Bacteroidota
Flavobacterium cutihirudinis DSM 25795 [QRDQ]
183592
183666
+
Arg
TCG
[ENA]
¡û
>W1810861153
QTTR01000001
Bacteroidota
Flavobacterium sp. GV028 [QTTR]
245365
245291
-
Arg
TCG
[ENA]
¡û
>W1511311993
JPRK01000008
Bacteroidota
Flavobacterium hibernum DSM 12611 [JPRK]
285718
285642
-
Arg
TCG
[ENA]
¡û
>W1511508968
JXQR01000014
Bacteroidota
Flavobacterium sp. MEB061 [JXQR]
71867
71943
+
Arg
TCG
[ENA]
¡û
>W1511656883
LEKS01000017
Bacteroidota
Flavobacterium sp. ABG [LEKS]
96430
96506
+
Arg
TCG
[ENA]
¡û
>W121103538
AKZQ01000031
Bacteroidota
Flavobacterium sp. F52 [AKZQ]
87177
87101
-
Arg
TCG
[ENA]
¡û
>W1610534871
JRLF01000010
Bacteroidota
Flavobacterium aquidurense [JRLF]
289190
289114
-
Arg
TCG
[ENA]
¡û
>W1610534964
JRLU01000001
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
353369
353445
+
Arg
TCG
[ENA]
¡û
>W1610535176
JRLZ01000004
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
233082
233006
-
Arg
TCG
[ENA]
¡û
>W1610719945
LMAJ01000007
Bacteroidota
Flavobacteriaceae bacterium CRH [LMAJ]
42450
42526
+
Arg
TCG
[ENA]
¡û
>W1610724583
LMEF01000031
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
73409
73485
+
Arg
TCG
[ENA]
¡û
>W1610729274
LMHW01000012
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
181353
181427
+
Arg
TCG
[ENA]
¡û
>W1610730779
LMJB01000008
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
182192
182268
+
Arg
TCG
[ENA]
¡û
>W1610731235
LMJL01000010
Bacteroidota
Flavobacterium sp. Root935 [LMJL]
221354
221278
-
Arg
TCG
[ENA]
¡û
>W1610734836
LMMA01000006
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
149842
149766
-
Arg
TCG
[ENA]
¡û
>W1610922836
LSYT01000008
Bacteroidota
Flavobacterium chilense [LSYT]
189571
189647
+
Arg
TCG
[ENA]
¡û
>W1610949961
LVEN01000050
Bacteroidota
Flavobacterium piscis [LVEN]
182774
182850
+
Arg
TCG
[ENA]
¡û
>W1710505770
FMTY01000001
Bacteroidota
Flavobacterium saliperosum [FMTY]
381665
381589
-
Arg
TCG
[ENA]
¡û
>W1710507257
FMVC01000009
Bacteroidota
Flavobacterium anhuiense [FMVC]
76909
76983
+
Arg
TCG
[ENA]
¡û
>W1710531668
FNPS01000004
Bacteroidota
Flavobacterium aquidurense [FNPS]
185878
185954
+
Arg
TCG
[ENA]
¡û
>W1710548029
FODK01000010
Bacteroidota
Flavobacterium sp. fv08 [FODK]
296849
296773
-
Arg
TCG
[ENA]
¡û
>W1710558997
FOMH01000004
Bacteroidota
Flavobacterium phragmitis [FOMH]
185196
185272
+
Arg
TCG
[ENA]
¡û
>W1710585100
FQWC01000001
Bacteroidota
Flavobacterium defluvii [FQWC]
121113
121037
-
Arg
TCG
[ENA]
¡û
>W1710585290
FQWG01000010
Bacteroidota
Flavobacterium frigidimaris [FQWG]
165
89
-
Arg
TCG
[ENA]
¡û
>W1710585331
FQWH01000001
Bacteroidota
Flavobacterium johnsoniae [FQWH]
92279
92205
-
Arg
TCG
[ENA]
¡û
>W1710586077
FQWW01000009
Bacteroidota
Flavobacterium sp. CF108 [FQWW]
158022
157946
-
Arg
TCG
[ENA]
¡û
>W1710589898
FRAO01000001
Bacteroidota
Flavobacterium johnsoniae [FRAO]
1425657
1425731
+
Arg
TCG
[ENA]
¡û
>W1710591517
FRBT01000006
Bacteroidota
Flavobacterium chilense [FRBT]
117435
117359
-
Arg
TCG
[ENA]
¡û
>W1710591703
FRBX01000005
Bacteroidota
Flavobacterium pectinovorum [FRBX]
181932
182006
+
Arg
TCG
[ENA]
¡û
>W1710591759
FRBY01000006
Bacteroidota
Flavobacterium saccharophilum [FRBY]
259320
259244
-
Arg
TCG
[ENA]
¡û
>W1710637107
JRLF01000010
Bacteroidota
Flavobacterium aquidurense [JRLF]
289190
289114
-
Arg
TCG
[ENA]
¡û
>W1710637200
JRLU01000001
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
353369
353445
+
Arg
TCG
[ENA]
¡û
>W1710637412
JRLZ01000004
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
233082
233006
-
Arg
TCG
[ENA]
¡û
>W1710756332
LIAC01000010
Bacteroidota
Flavobacterium sp. NLM [LIAC]
298763
298687
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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