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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159151 (60 seq.)
>W1710865251
LMGN01000011
Alphaproteobacteria
Rhizobium sp. Root564 [LMGN]
409482
409406
-
Pro
GGG
[ENA]
¡û
>W1710866895
LMHV01000043
Alphaproteobacteria
Rhizobium sp. Root708 [LMHV]
779264
779340
+
Pro
GGG
[ENA]
¡û
>W1710875874
LMOT01000005
Alphaproteobacteria
Rhizobium sp. Leaf155 [LMOT]
235426
235350
-
Pro
GGG
[ENA]
¡û
>W1711120281
LUFU01000014
Alphaproteobacteria
Ensifer aridi [LUFU]
514881
514957
+
Pro
GGG
[ENA]
¡û
>W1711120329
LUFV01000010
Alphaproteobacteria
Ensifer aridi [LUFV]
572752
572828
+
Pro
GGG
[ENA]
¡û
>W1711120380
LUFW01000018
Alphaproteobacteria
Ensifer aridi [LUFW]
610369
610445
+
Pro
GGG
[ENA]
¡û
>W1711120431
LUFX01000012
Alphaproteobacteria
Ensifer aridi [LUFX]
552087
552163
+
Pro
GGG
[ENA]
¡û
>W1711213639
LXKN01000001
Alphaproteobacteria
Rhizobium sp. AC27/96 [LXKN]
521237
521313
+
Pro
GGG
[ENA]
¡û
>W1711213733
LXKP01000001
Alphaproteobacteria
Agrobacterium sp. B131/95 [LXKP]
350501
350577
+
Pro
GGG
[ENA]
¡û
>W1711213787
LXKQ01000001
Alphaproteobacteria
Agrobacterium sp. B133/95 [LXKQ]
888498
888422
-
Pro
GGG
[ENA]
¡û
>W131174596
ARIO01000041
Alphaproteobacteria
Rhizobium sp. 2MFCol3.1 [ARIO]
25400
25324
-
Pro
GGG
[ENA]
¡û
>W1711636787
MPVZ01000007
Alphaproteobacteria
Rhizobium sp. P44RR-XXIV [MPVZ]
189424
189500
+
Pro
GGG
[ENA]
¡û
>WENV180023185
FTHP01000642
[FTHP] metagenome; soil
2148
2224
+
Pro
GGG
[ENA]
¢þ
>W141207586
AZNX01000001
Alphaproteobacteria
Ensifer aridi TW10 [AZNX]
149579
149503
-
Pro
GGG
[ENA]
¡û
>W141236075
BAYX01000002
Alphaproteobacteria
Rhizobium rhizogenes NBRC 13257 [BAYX]
350278
350354
+
Pro
GGG
[ENA]
¡û
>W141276519
JADW01000001
Alphaproteobacteria
Agrobacterium larrymoorei ATCC 51759 [JADW]
591
515
-
Pro
GGG
[ENA]
¡û
>WENV183734304
PJTZ01001451
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
2911
2835
-
Pro
GGG
[ENA]
¢þ
>WENV183735355
PJUA01016271
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
90
166
+
Pro
GGG
[ENA]
¢þ
>WENV183735751
PJUB01001252
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
840
764
-
Pro
GGG
[ENA]
¢þ
>WENV170010032
APMI01007023
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
248
324
+
Pro
GGG
[ENA]
¢þ
>W141485669
JFZP01000013
Alphaproteobacteria
Rhizobium rhizogenes [JFZP]
1775134
1775058
-
Pro
GGG
[ENA]
¡û
>C181075756
CP023063
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 [CP023063]
949139
949063
-
Pro
GGG
-
¡û
>C181099227
CP024307
Alphaproteobacteria
Sinorhizobium fredii NXT3 [CP024307]
1350257
1350181
-
Pro
GGG
-
¡û
>C191093644
CP032684
Alphaproteobacteria
Rhizobium sp. CCGE531 [CP032684]
1424961
1425037
+
Pro
GGG
-
¡û
>C191093695
CP032689
Alphaproteobacteria
Rhizobium sp. CCGE532 [CP032689]
1423935
1424011
+
Pro
GGG
-
¡û
>C191170909
CP039691
Alphaproteobacteria
Agrobacterium larrymoorei CFBP5473 [CP039691, CP039692]
1967579
1967655
+
Pro
GGG
-
¡û
>W141816461
JQJW01000003
Alphaproteobacteria
Rhizobium rhizogenes [JQJW]
216837
216761
-
Pro
GGG
[ENA]
¡û
>W141816500
JQJX01000002
Alphaproteobacteria
Rhizobium rhizogenes [JQJX]
2777
2701
-
Pro
GGG
[ENA]
¡û
>W141817762
JQLA01000005
Alphaproteobacteria
Rhizobium sp. OK494 [JQLA]
386584
386660
+
Pro
GGG
[ENA]
¡û
>W141817813
JQLB01000004
Alphaproteobacteria
Rhizobium sp. YR060 [JQLB]
366943
366867
-
Pro
GGG
[ENA]
¡û
>W1910636545
LODU01000073
Alphaproteobacteria
Sinorhizobium americanum FG01 [LODU]
129546
129622
+
Pro
GGG
[ENA]
¡û
>W1910636591
LODV01000036
Alphaproteobacteria
Sinorhizobium americanum NG07B [LODV]
528734
528658
-
Pro
GGG
[ENA]
¡û
>C09100676
CP000628
Alphaproteobacteria
Rhizobium rhizogenes K84 [CP000628, CP000629]
1411002
1411078
+
Pro
GGG
[Ensembl]
¡û
>W1911409648
NWTB01000009
Alphaproteobacteria
Sinorhizobium sp. FG01 [NWTB]
129546
129622
+
Pro
GGG
[ENA]
¡û
>W1911409754
NWTD01000004
Alphaproteobacteria
Sinorhizobium sp. NG07B [NWTD]
528734
528658
-
Pro
GGG
[ENA]
¡û
>W1911551792
PCDP01000001
Alphaproteobacteria
Rhizobium tubonense CCBAU 85046 [PCDP]
226259
226183
-
Pro
GGG
[ENA]
¡û
>W1911551854
PCDQ01000061
Alphaproteobacteria
Rhizobium tumorigenes 1078 [PCDQ]
410220
410296
+
Pro
GGG
[ENA]
¡û
>W1810119025
PHRE01000004
Alphaproteobacteria
Brucella pituitosa BU72 [PHRE]
1736310
1736234
-
Pro
GGG
[ENA]
¡û
>W1810537749
QDFK01000006
Alphaproteobacteria
Sphingomonas sp. TPD3009 [QDFK]
408897
408973
+
Pro
GGG
[ENA]
¡û
>W1810537795
QDFL01000006
Alphaproteobacteria
Agrobacterium tumefaciens TPD7005 [QDFL]
408897
408973
+
Pro
GGG
[ENA]
¡û
>W1810538269
QDFR01000006
Alphaproteobacteria
Rhizobium rhizogenes TPD7009 [QDFR]
115418
115342
-
Pro
GGG
[ENA]
¡û
>W1810594015
QFYP01000001
Alphaproteobacteria
Phenylobacterium hankyongense HKS-05 [QFYP]
3359797
3359873
+
Pro
GGG
[ENA]
¡û
>W1810694680
QLMF01000002
Alphaproteobacteria
Rhizobium etli R22G [QLMF]
264774
264850
+
Pro
GGG
[ENA]
¡û
>W1511432708
JUGS01000008
Alphaproteobacteria
Rhizobium rhizogenes CF262 [JUGS]
1057497
1057573
+
Pro
GGG
[ENA]
¡û
>W1511433512
JUHG01000018
Alphaproteobacteria
Rhizobium rhizogenes OV677 [JUHG]
195246
195322
+
Pro
GGG
[ENA]
¡û
>W1511433652
JUHJ01000012
Alphaproteobacteria
Rhizobium sp. YR528 [JUHJ]
25255
25179
-
Pro
GGG
[ENA]
¡û
>W1511433939
JUHP01000001
Alphaproteobacteria
Rhizobium rhizogenes YR530 [JUHP]
1531772
1531848
+
Pro
GGG
[ENA]
¡û
>W1511433999
JUHQ01000013
Alphaproteobacteria
Rhizobium tropici YR635 [JUHQ]
150312
150388
+
Pro
GGG
[ENA]
¡û
>W1511582668
LATE01000046
Alphaproteobacteria
Sinorhizobium sp. PC2 [LATE]
349955
349879
-
Pro
GGG
[ENA]
¡û
>W121066380
AJQU01000011
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 [AJQU]
16451
16375
-
Pro
GGG
[ENA]
¡û
>W121002953
AEYF01000001
Alphaproteobacteria
Rhizobium sp. CCGE 510 [AEYF]
174092
174016
-
Pro
GGG
[ENA]
¡û
>W121068998
AJVM01000019
Alphaproteobacteria
Rhizobium sp. AP16 [AJVM]
50749
50673
-
Pro
GGG
[ENA]
¡û
>W1610514455
FMAF01000001
Alphaproteobacteria
Rhizobium lusitanum [FMAF]
68838
68762
-
Pro
GGG
[ENA]
¡û
>W1610727597
LMGN01000011
Alphaproteobacteria
Rhizobium sp. Root564 [LMGN]
409482
409406
-
Pro
GGG
[ENA]
¡û
>W1610729241
LMHV01000043
Alphaproteobacteria
Rhizobium sp. Root708 [LMHV]
779264
779340
+
Pro
GGG
[ENA]
¡û
>W1610738220
LMOT01000005
Alphaproteobacteria
Rhizobium sp. Leaf155 [LMOT]
235426
235350
-
Pro
GGG
[ENA]
¡û
>W1611000643
LXKN01000001
Alphaproteobacteria
Rhizobium sp. AC27/96 [LXKN]
521237
521313
+
Pro
GGG
[ENA]
¡û
>W1611000737
LXKP01000001
Alphaproteobacteria
Agrobacterium sp. B131/95 [LXKP]
350501
350577
+
Pro
GGG
[ENA]
¡û
>W1611000791
LXKQ01000001
Alphaproteobacteria
Agrobacterium sp. B133/95 [LXKQ]
888498
888422
-
Pro
GGG
[ENA]
¡û
>W1710500145
FMAF01000001
Alphaproteobacteria
Rhizobium lusitanum [FMAF]
68838
68762
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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