This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159152 (49 seq.)
>W1710879673
LMRV01000042
Bacillota
Paenibacillus sp. Soil522 [LMRV]
214
290
+
Ile
GAT
[ENA]
¡û
>W1711634161
MPTW01000066
Bacillota
Paenibacillus odorifer [MPTW]
145
221
+
Ile
GAT
[ENA]
¡û
>C171070774
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
416002
416078
+
Ile
GAT
-
¡û
>WENV181364754
OFPC01000950
[OFPC] sediment metagenome; Lake sediment
267
343
+
Ile
GAT
[ENA]
¢þ
>WENV183727405
PJTO01048578
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
337
261
-
Ile
GAT
[ENA]
¢þ
>WENV183727423
PJTO01053138
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
123
47
-
Ile
GAT
[ENA]
¢þ
>WENV183727433
PJTO01055829
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
123
47
-
Ile
GAT
[ENA]
¢þ
>WENV183735373
PJUA01017598
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
251
327
+
Ile
GAT
[ENA]
¢þ
>WENV183738190
PJUD01112017
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
317
241
-
Ile
GAT
[ENA]
¢þ
>WENV170578709
FUFK010026008
[FUFK] metagenome; unknown
85
9
-
Ile
GAT
[ENA]
¢þ
>C181029262
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
416424
416500
+
Ile
GAT
-
¡û
>C181054807
CP021965
Bacillota
Paenibacillus odorifer CBA7130 [CP021965]
952360
952436
+
Ile
GAT
-
¡û
>C181121287
CP025696
Bacillota
Paenibacillus sp. lzh-N1 [CP025696]
1300590
1300514
-
Ile
GAT
-
¡û
>C191007113
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
6078145
6078221
+
Ile
GAT
-
¡û
>C191007142
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
5247139
5247063
-
Ile
GAT
-
¡û
>C191007145
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
5060186
5060110
-
Ile
GAT
-
¡û
>C191007647
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
13166
13242
+
Ile
GAT
-
¡û
>C191007649
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
108232
108308
+
Ile
GAT
-
¡û
>C191007652
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
582617
582693
+
Ile
GAT
-
¡û
>C191106134
CP033433
Bacillota
Cohnella candidum 18JY8-7 [CP033433]
4328850
4328926
+
Ile
GAT
-
¡û
>C191106138
CP033433
Bacillota
Cohnella candidum 18JY8-7 [CP033433]
4427284
4427360
+
Ile
GAT
-
¡û
>C191106150
CP033433
Bacillota
Cohnella candidum 18JY8-7 [CP033433]
3609339
3609263
-
Ile
GAT
-
¡û
>C191125187
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
803077
803153
+
Ile
GAT
-
¡û
>C191125190
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
1097101
1097177
+
Ile
GAT
-
¡û
>C191125229
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
6301405
6301329
-
Ile
GAT
-
¡û
>C191143931
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
1977303
1977227
-
Ile
GAT
-
¡û
>W1910827187
MWSG01000056
Bacillota
Cohnella sp. CIP 111063 [MWSG]
535
459
-
Ile
GAT
[ENA]
¡û
>W1911771047
QXJM01000016
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
39872
39948
+
Ile
GAT
[ENA]
¡û
>W1911771089
QXJM01000040
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
432860
432784
-
Ile
GAT
[ENA]
¡û
>W1911771092
QXJM01000040
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
48236
48160
-
Ile
GAT
[ENA]
¡û
>W1911779777
QXQB01000017
Bacillota
Paenibacillus pinisoli JCM 19203 [QXQB]
209
285
+
Ile
GAT
[ENA]
¡û
>W1911779780
QXQB01000019
Bacillota
Paenibacillus pinisoli JCM 19203 [QXQB]
352
276
-
Ile
GAT
[ENA]
¡û
>W1810367710
PVYW01000056
Bacillota
Cohnella sp. SGD-V74 [PVYW]
535
459
-
Ile
GAT
[ENA]
¡û
>W1810608853
QGTQ01000005
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
270
346
+
Ile
GAT
[ENA]
¡û
>W1810608881
QGTQ01000024
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
102156
102080
-
Ile
GAT
[ENA]
¡û
>W10126269
AEDD01000004
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
378365
378289
-
Ile
GAT
[ENA]
¡û
>W10126286
AEDD01000005
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
106290
106214
-
Ile
GAT
[ENA]
¡û
>W10126289
AEDD01000005
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
48229
48153
-
Ile
GAT
[ENA]
¡û
>W10126342
AEDD01000021
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
5789
5865
+
Ile
GAT
[ENA]
¡û
>W10126348
AEDD01000037
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
318
394
+
Ile
GAT
[ENA]
¡û
>W11133530
AEDD01000004
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
378365
378289
-
Ile
GAT
[ENA]
¡û
>W11133547
AEDD01000005
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
106290
106214
-
Ile
GAT
[ENA]
¡û
>W11133550
AEDD01000005
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
48229
48153
-
Ile
GAT
[ENA]
¡û
>W11133603
AEDD01000021
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
5789
5865
+
Ile
GAT
[ENA]
¡û
>W11133609
AEDD01000037
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
318
394
+
Ile
GAT
[ENA]
¡û
>W1610742019
LMRV01000042
Bacillota
Paenibacillus sp. Soil522 [LMRV]
214
290
+
Ile
GAT
[ENA]
¡û
>W1710546674
FOCJ01000007
Bacillota
Paenibacillus sp. OV219 [FOCJ]
206
282
+
Ile
GAT
[ENA]
¡û
>W1710546744
FOCJ01000038
Bacillota
Paenibacillus sp. OV219 [FOCJ]
323
399
+
Ile
GAT
[ENA]
¡û
>W1710565379
FORE01000020
Bacillota
Paenibacillus sp. UNC496MF [FORE]
179354
179278
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK